RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CDH18Q13634 790 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 ADGRE1Q14246 886 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 SPARCL1Q14515 664 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 LBRQ14739 615 aaKnown RBP14.52□□□□□ -0.08
USP39-220ENST00000613444 GRIN2CQ14957 1233 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 BBS9Q3SYG4 887 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 LRIG3Q6UXM1 1119 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 MTERF4Q7Z6M4 381 aaKnown RBP14.52□□□□□ -0.08
USP39-220ENST00000613444 MFN1Q8IWA4 741 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 ADGRG2Q8IZP9 1017 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 KIAA1958Q8N8K9 716 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 FIBINQ8TAL6 211 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 SH3GL2Q99962 352 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 NT5MQ9NPB1 228 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 MTCH2Q9Y6C9 303 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 WNT6Q9Y6F9 365 aa14.52□□□□□ -0.08
USP39-220ENST00000613444 MYLKQ15746 1914 aa14.52□□□□□ -0.09
USP39-220ENST00000613444 ERI2A8K979 691 aaKnown RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 SYF2O95926 243 aaKnown RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 MT-CYBP00156 380 aaPredicted RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 MMP2P08253 660 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 ETFBP38117 255 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 CSKP41240 450 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 OXCT1P55809 520 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 ZNF844Q08AG5 666 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 NIPAL4Q0D2K0 466 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 COL19A1Q14993 1142 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 DENND2CQ68D51 928 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 LRRC8BQ6P9F7 803 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 PRPF39Q86UA1 669 aaKnown RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 ANKMY2Q8IV38 441 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 IRF7Q92985 503 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 TADA1Q96BN2 335 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 OTUB2Q96DC9 234 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 IMP4Q96G21 291 aaKnown RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 SIGLEC10Q96LC7 697 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 MUC3BQ9H195 1237 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 SLC25A51Q9H1U9 297 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 XAB2Q9HCS7 855 aaKnown RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 GDE1Q9NZC3 331 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 UBP1Q9NZI7 540 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 A0A1W2PPC1 479 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 SNAP91O60641 907 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 POU3F3P20264 500 aaPredicted RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 FCARP24071 287 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 LTBRP36941 435 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 ELK3P41970 407 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 GPX6P59796 221 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 MAXP61244 160 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 LMAN2Q12907 356 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 ALG1LQ6GMV1 187 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 GET4Q7L5D6 327 aaPredicted RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 FBXO36Q8NEA4 188 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 ARRDC2Q8TBH0 407 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 SMARCD2Q92925 531 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 TRPV4Q9HBA0 871 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 PLAC1Q9HBJ0 212 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 SPHK2Q9NRA0 654 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 TTLL3Q9Y4R7 772 aa14.51□□□□□ -0.09
USP39-220ENST00000613444 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.51□□□□□ -0.09
USP39-220ENST00000613444 CBX4O00257 560 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 USP12O75317 370 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 LMAN1P49257 510 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 FAM193AP78312 1265 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 APCDD1Q8J025 514 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 MPP5Q8N3R9 675 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.5□□□□□ -0.09
USP39-220ENST00000613444 UHMK1Q8TAS1 419 aaKnown RBP14.5□□□□□ -0.09
USP39-220ENST00000613444 NSMCE1Q8WV22 266 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 ASIC4Q96FT7 647 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 TTC25Q96NG3 672 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 CASS4Q9NQ75 786 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 MARK1Q9P0L2 795 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 INTS6Q9UL03 887 aaKnown RBP14.5□□□□□ -0.09
USP39-220ENST00000613444 AAR2Q9Y312 384 aaKnown RBP14.5□□□□□ -0.09
USP39-220ENST00000613444 TMEM265A0A087WTH1 108 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 H3BQF6 201 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 ANXA9O76027 345 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 CYBBP04839 570 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 ABHD2P08910 425 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 CD70P32970 193 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 ADRA1AP35348 466 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 PLK1P53350 603 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 SARNPP82979 210 aaKnown RBP14.5□□□□□ -0.09
USP39-220ENST00000613444 PRPSAP1Q14558 356 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 CYTH1Q15438 398 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 CCDC38Q502W7 563 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 LY6G5CQ5SRR4 150 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 ASTLQ6HA08 431 aaPredicted RBP14.5□□□□□ -0.09
USP39-220ENST00000613444 KDELC1Q6UW63 502 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 DCAF4L2Q8NA75 395 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 PYROXD1Q8WU10 500 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 PSKH2Q96QS6 385 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 MGME1Q9BQP7 344 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 ACBD3Q9H3P7 528 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 LRRC40Q9H9A6 602 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 PIH1D1Q9NWS0 290 aaKnown RBP14.5□□□□□ -0.09
USP39-220ENST00000613444 UBA2Q9UBT2 640 aaPredicted RBP14.5□□□□□ -0.09
USP39-220ENST00000613444 VPS51Q9UID3 782 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 VPS28Q9UK41 221 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms