RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 C3orf67Q6ZVT6 689 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 TMEM139Q8IV31 216 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ACTRT2Q8TDY3 377 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 C12orf43Q96C57 262 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 IL1RL2Q9HB29 575 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SMPD3Q9NY59 655 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ERAP1Q9NZ08 941 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 GABBR1Q9UBS5 961 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SCN11AQ9UI33 1791 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 FAM237AA0A1B0GTK4 181 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SDR42E2A6NKP2 422 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 NR4A1P22736 598 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 GSTM2P28161 218 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CDC73Q6P1J9 531 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 C15orf52Q6ZUT6 534 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF605Q86T29 641 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 FRMD6Q96NE9 622 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CFL2Q9Y281 166 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 A0A0B4J269 797 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 RNASEH1O60930 286 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 PLEKP08567 350 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 GZMAP12544 262 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SLC7A1P30825 629 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CRKP46108 304 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 KCNJ1P48048 391 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 LIG4P49917 911 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 AP2S1P53680 142 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 DYNLT1P63172 113 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 TUBB3Q13509 450 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CDH18Q13634 790 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 DLG2Q15700 870 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SPATS1Q496A3 300 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 DNAJB2P25686 324 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 DGCR6Q14129 220 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 PPP1R18Q6NYC8 613 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF773Q6PK81 442 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ANKFN1Q8N957 763 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 BRSK1Q8TDC3 778 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CDK5RAP1Q96SZ6 601 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SLC30A2Q9BRI3 323 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 PAK6Q9NQU5 681 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CA5BQ9Y2D0 317 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 POLR3HQ9Y535 204 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 TPST1O60507 370 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 PLOD3O60568 738 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ADD2P35612 726 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 RAB2AP61019 212 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 TCIRG1Q13488 830 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 TRIP11Q15643 1979 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CDKL3Q8IVW4 592 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SCUBE3Q8IX30 993 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 IFNL2Q8IZJ0 200 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 BSNDQ8WZ55 320 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF512BQ96KM6 892 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 TWNKQ96RR1 684 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 GGA1Q9UJY5 639 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 WNK3Q9BYP7 1800 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CST8O60676 142 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 HNF1BP35680 557 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CARTPTQ16568 116 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 RAD54LQ92698 747 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 KAT2AQ92830 837 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ZDHHC12Q96GR4 267 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 EXD2Q9NVH0 621 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 UBP1Q9NZI7 540 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF112Q9UJU3 913 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 UTYO14607 1347 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 RBP1P09455 135 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CD9P21926 228 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SRP54P61011 504 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 GTF2IP78347 998 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 USPL1Q5W0Q7 1092 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 METTL2BQ6P1Q9 378 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 COMMD7Q86VX2 200 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 TRPV3Q8NET8 790 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 OR5J2Q8NH18 312 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 GANCQ8TET4 914 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 PMEPA1Q969W9 287 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 HAVCR1Q96D42 359 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 NMUR2Q9GZQ4 415 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 RBBP6Q7Z6E9 1792 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 SPATA31A6Q5VVP1 1343 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 AMPD1P23109 780 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 RPL21P46778 160 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 RPL14P50914 215 aaKnown RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 KLF6Q99612 283 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 IDI2Q9BXS1 227 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 NCOR1O75376 2440 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ZNF335Q9H4Z2 1342 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ATP6AP2A0A1C7CYW4 349 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 C1orf196B1AJZ1 125 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 INPPL1O15357 1258 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 CSPG5O95196 566 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 PSMA3P25788 255 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 GNASQ5JWF2 1037 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 ARHGEF26Q96DR7 871 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 HTATIP2Q9BUP3 242 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 GSDMCQ9BYG8 508 aa5.01□□□□□ -1.61
VPS13D-213ENST00000613099 RC3H2Q9HBD1 1191 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms