RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 DNAI1Q9UI46 699 aa16.53■□□□□ 0.24
LSM4-206ENST00000600289 FZD4Q9ULV1 537 aa16.53■□□□□ 0.24
LSM4-206ENST00000600289 ZSCAN5CA6NGD5 496 aaPredicted RBP16.52■□□□□ 0.24
LSM4-206ENST00000600289 C10orf142B7Z368 130 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 MYO1FO00160 1098 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 CBX4O00257 560 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 MCF2LO15068 1137 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 CREB3O43889 395 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 MT-CO1P00395 513 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 C5AR1P21730 350 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 GLDCP23378 1020 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 ACVRL1P37023 503 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 SLC25A11Q02978 314 aaKnown RBP16.52■□□□□ 0.24
LSM4-206ENST00000600289 ZNF33AQ06730 810 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 FOXC1Q12948 553 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 POLD3Q15054 466 aaPredicted RBP16.52■□□□□ 0.24
LSM4-206ENST00000600289 TCEAL1Q15170 157 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 CCDC6Q16204 474 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 PARP15Q460N3 678 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 SOWAHCQ53LP3 525 aaPredicted RBP16.52■□□□□ 0.24
LSM4-206ENST00000600289 C22orf39Q6P5X5 142 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 RABEPKQ7Z6M1 372 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 CACUL1Q86Y37 369 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 SYT12Q8IV01 421 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 SLC41A1Q8IVJ1 513 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 STK40Q8N2I9 435 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 ATP11CQ8NB49 1132 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 KCTD15Q96SI1 283 aaPredicted RBP16.52■□□□□ 0.24
LSM4-206ENST00000600289 SPON2Q9BUD6 331 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 PACSIN1Q9BY11 444 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 DHX35Q9H5Z1 703 aaKnown RBP16.52■□□□□ 0.24
LSM4-206ENST00000600289 GPATCH2LQ9NWQ4 482 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 EVLQ9UI08 416 aaPredicted RBP16.52■□□□□ 0.24
LSM4-206ENST00000600289 PILRBQ9UKJ0 227 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 INTUQ9ULD6 942 aa16.52■□□□□ 0.24
LSM4-206ENST00000600289 PI4KAP42356 2102 aa16.52■□□□□ 0.23
LSM4-206ENST00000600289 EEF2KO00418 725 aaKnown RBP16.51■□□□□ 0.23
LSM4-206ENST00000600289 GIPC1O14908 333 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 SMAD6O43541 496 aaKnown RBP16.51■□□□□ 0.23
LSM4-206ENST00000600289 KDELR3O43731 214 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 ZNF821O75541 412 aaPredicted RBP16.51■□□□□ 0.23
LSM4-206ENST00000600289 MTA2O94776 668 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 LCA5LO95447 670 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 CD160O95971 181 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 VAV1P15498 845 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 FECHP22830 423 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 IL1R2P27930 398 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 SLC8A1P32418 973 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 MAN1A1P33908 653 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 NUMBP49757 651 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 NDST2P52849 883 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 ACCSLQ4AC99 568 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 RFX8Q6ZV50 586 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 Q6ZVU0 165 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 MMAAQ8IVH4 418 aaKnown RBP16.51■□□□□ 0.23
LSM4-206ENST00000600289 PLPP6Q8IY26 295 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 PCDH20Q8N6Y1 951 aaKnown RBP16.51■□□□□ 0.23
LSM4-206ENST00000600289 OR2A12Q8NGT7 310 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 FAM71BQ8TC56 605 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 CASKIN2Q8WXE0 1202 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 ZCCHC14Q8WYQ9 949 aaKnown RBP16.51■□□□□ 0.23
LSM4-206ENST00000600289 DNASE2BQ8WZ79 361 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 ISG20Q96AZ6 181 aaKnown RBP16.51■□□□□ 0.23
LSM4-206ENST00000600289 HSPA12BQ96MM6 686 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 BTBD1Q9H0C5 482 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 CTTNBP2NLQ9P2B4 639 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 PPM1HQ9ULR3 514 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 HPCAL4Q9UM19 191 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 NCKAP1Q9Y2A7 1128 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 NUMA1Q14980 2115 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 ADAMTS9Q9P2N4 1935 aa16.51■□□□□ 0.23
LSM4-206ENST00000600289 METTL12A8MUP2 240 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 K7ERQ8 282 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 MID1O15344 667 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 SLC7A4O43246 635 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 PROSCO94903 275 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 TCF4P15884 667 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 ACSL1P33121 698 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 DPYSQ14117 519 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 WDR45BQ5MNZ6 344 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 SYCP2LQ5T4T6 812 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 FAM46CQ5VWP2 391 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 DAB2IPQ5VWQ8 1189 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 AFMIDQ63HM1 303 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 SLC23A3Q6PIS1 610 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 LINGO4Q6UY18 593 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 ARMCX6Q7L4S7 300 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 RHOT2Q8IXI1 618 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 CCDC170Q8IYT3 715 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 C12orf50Q8NA57 414 aaPredicted RBP16.5■□□□□ 0.23
LSM4-206ENST00000600289 CEP76Q8TAP6 659 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 BTBD6Q96KE9 485 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 PANX2Q96RD6 677 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 GPR174Q9BXC1 333 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 KLC2Q9H0B6 622 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 LRRC19Q9H756 370 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 ZWILCHQ9H900 591 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 SPTLC3Q9NUV7 552 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 FBXL12Q9NXK8 326 aa16.5■□□□□ 0.23
LSM4-206ENST00000600289 RCOR3Q9P2K3 495 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms