RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 MTA2O94776 668 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 H2AFZP0C0S5 128 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 GOT1P17174 413 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 SDHBP21912 280 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 ID4P47928 161 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 NDST2P52849 883 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 ADPRHP54922 357 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 SERINC3Q13530 473 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 DUOXA1Q1HG43 343 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 RSPO4Q2I0M5 234 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-213ENST00000598355 ACCSLQ4AC99 568 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 AASDHQ4L235 1098 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-213ENST00000598355 BOLA3Q53S33 107 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 TRIM61Q5EBN2 209 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 WDR45BQ5MNZ6 344 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 SYCP2LQ5T4T6 812 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 AGBL4Q5VU57 503 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 DCAF12L1Q5VU92 463 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 IL31Q6EBC2 164 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 TXNRD3NBQ6F5E7 133 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 RFX8Q6ZV50 586 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 H2AFVQ71UI9 128 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 FAM124AQ86V42 546 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 PIP4K2CQ8TBX8 421 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 CTNNBL1Q8WYA6 563 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-213ENST00000598355 HMCESQ96FZ2 354 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 CCDC114Q96M63 670 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 EDEM2Q9BV94 578 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 NEUROG2Q9H2A3 272 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 DEF6Q9H4E7 631 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 PDFQ9HBH1 243 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 OSGEPQ9NPF4 335 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 SUSD2Q9UGT4 822 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 ACTL7AQ9Y615 435 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 WASF2Q9Y6W5 498 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 TRPM6Q9BX84 2022 aa16.46■□□□□ 0.23
TRIM28-213ENST00000598355 CABIN1Q9Y6J0 2220 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-213ENST00000598355 MEI4A8MW99 385 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 RASA4BC9J798 803 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 C1QTNF3-AMACRE9PGA6 284 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 MYO1FO00160 1098 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 KHNYNO15037 678 aaKnown RBP16.45■□□□□ 0.22
TRIM28-213ENST00000598355 RASA4O43374 803 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 AKR1B10O60218 316 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 IL1BP01584 269 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 IGHV4-34P06331 123 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 SERPINF2P08697 491 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 RARAP10276 462 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 IRX4P78413 519 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 PUM1Q14671 1186 aaKnown RBP eCLIP16.45■□□□□ 0.22
TRIM28-213ENST00000598355 TCEAL1Q15170 157 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 TSR1Q2NL82 804 aaKnown RBP16.45■□□□□ 0.22
TRIM28-213ENST00000598355 FAM46CQ5VWP2 391 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 DPY19L3Q6ZPD9 716 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 ARHGAP12Q8IWW6 846 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 NPWQ8N729 165 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 TMIEQ8NEW7 156 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 OR2T34Q8NGX1 318 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 CASKIN2Q8WXE0 1202 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 TSC1Q92574 1164 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 CCDC42Q96M95 316 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 RTKNQ9BST9 563 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 KDM4CQ9H3R0 1056 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 SPTLC3Q9NUV7 552 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 CWC15Q9P013 229 aaKnown RBP16.45■□□□□ 0.22
TRIM28-213ENST00000598355 LCMT1Q9UIC8 334 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 CDV3Q9UKY7 258 aaKnown RBP16.45■□□□□ 0.22
TRIM28-213ENST00000598355 INTUQ9ULD6 942 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 NCKAP1Q9Y2A7 1128 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 FCF1Q9Y324 198 aaKnown RBP16.45■□□□□ 0.22
TRIM28-213ENST00000598355 SPTBN2O15020 2390 aa16.45■□□□□ 0.22
TRIM28-213ENST00000598355 RNF103O00237 685 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 CDX4O14627 284 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-213ENST00000598355 TM4SF5O14894 197 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 PLRG1O43660 514 aaKnown RBP16.44■□□□□ 0.22
TRIM28-213ENST00000598355 RNASEH2AO75792 299 aaKnown RBP16.44■□□□□ 0.22
TRIM28-213ENST00000598355 PROSCO94903 275 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 LCA5LO95447 670 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 GSRP00390 522 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 PRNPP04156 253 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 ERCC2P18074 760 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 CHRNA3P32297 505 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 MAN1A1P33908 653 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 ARSEP51690 589 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 SMTNL2Q2TAL5 461 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 INO80DQ53TQ3 878 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-213ENST00000598355 KCNT1Q5JUK3 1230 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 PIP5KL1Q5T9C9 394 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 KIAA0895LQ68EN5 471 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 POLNQ7Z5Q5 900 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 HDDC3Q8N4P3 179 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 CHST14Q8NCH0 376 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 BIRC7Q96CA5 298 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 OMDQ99983 421 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 NUSAP1Q9BXS6 441 aaKnown RBP16.44■□□□□ 0.22
TRIM28-213ENST00000598355 TNKS2Q9H2K2 1166 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 PCDH18Q9HCL0 1135 aa16.44■□□□□ 0.22
TRIM28-213ENST00000598355 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.44■□□□□ 0.22
TRIM28-213ENST00000598355 RCOR3Q9P2K3 495 aaPredicted RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms