RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 NEMP2A6NFY4 417 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 CAPN8A6NHC0 703 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 M0QYT0 321 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 KPNA3O00505 521 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-212ENST00000597995 BNIP3LO60238 219 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 OPA1O60313 960 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 DAB1O75553 588 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 GRAP2O75791 330 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 PIAS2O75928 621 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 DXOO77932 396 aaKnown RBP12.8□□□□□ -0.36
TRIM28-212ENST00000597995 MT-CO1P00395 513 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 GIMD1P0DJR0 217 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 PRLRP16471 622 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 EEF1GP26641 437 aaKnown RBP12.8□□□□□ -0.36
TRIM28-212ENST00000597995 KLK7P49862 253 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 DUSP3P51452 185 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-212ENST00000597995 PTK2Q05397 1052 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 CCDC173Q0VFZ6 552 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 BRMS1LQ5PSV4 323 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 ACBD5Q5T8D3 534 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-212ENST00000597995 OR6B2Q6IFH4 312 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 FAM183BPQ6ZVS7 135 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 ERN2Q76MJ5 926 aaKnown RBP12.8□□□□□ -0.36
TRIM28-212ENST00000597995 SLC26A9Q7LBE3 791 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 C14orf80Q86SX3 495 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 FAM181AQ8N9Y4 354 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 DCAF4L2Q8NA75 395 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 ATP11CQ8NB49 1132 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 ZNF397Q8NF99 534 aaPredicted RBP12.8□□□□□ -0.36
TRIM28-212ENST00000597995 OR13H1Q8NG92 308 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 ARRDC3Q96B67 414 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 DUSP23Q9BVJ7 150 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 HDAC8Q9BY41 377 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 GANQ9H2C0 597 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 WDCPQ9H6R7 721 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 FANCLQ9NW38 375 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 ARHGEF38Q9NXL2 777 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 NLGN3Q9NZ94 848 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 HS3ST3A1Q9Y663 406 aa12.8□□□□□ -0.36
TRIM28-212ENST00000597995 TDRD6O60522 2096 aaKnown RBP12.79□□□□□ -0.36
TRIM28-212ENST00000597995 DRGXA6NNA5 263 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 RIOK3O14730 519 aaKnown RBP12.79□□□□□ -0.36
TRIM28-212ENST00000597995 SCAMP1O15126 338 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 SNAP91O60641 907 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 CNTN5O94779 1100 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 RHOCP08134 193 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 UCHL3P15374 230 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 CYP11B1P15538 503 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 CXCR3P49682 368 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 UCNP55089 124 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 PCBP4P57723 403 aaKnown RBP12.79□□□□□ -0.36
TRIM28-212ENST00000597995 ERVPABLB-1P60509 514 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 HNRNPKP61978 463 aaKnown RBP eCLIP12.79□□□□□ -0.36
TRIM28-212ENST00000597995 SLC6A3Q01959 620 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 RAPGEF1Q13905 1077 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 KRT31Q15323 416 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 ALFQ53S48 1182 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 ZDHHC17Q8IUH5 632 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 ZNF683Q8IZ20 524 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 ZNF843Q8N446 348 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 KLK6Q92876 244 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 PPP1R16AQ96I34 528 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 HIC2Q96JB3 615 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 APOLD1Q96LR9 279 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 C1orf74Q96LT6 269 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 DEPDC7Q96QD5 511 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 NPY6RQ99463 290 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 LGMNQ99538 433 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 MYOCQ99972 504 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 CALN1Q9BXU9 219 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 TKTL2Q9H0I9 626 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 SIK2Q9H0K1 926 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 VPS16Q9H269 839 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 HSD3B7Q9H2F3 369 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 VPS51Q9UID3 782 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 ZFR2Q9UPR6 939 aaKnown RBP12.79□□□□□ -0.36
TRIM28-212ENST00000597995 PAXBP1Q9Y5B6 917 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 PCDHB1Q9Y5F3 818 aa12.79□□□□□ -0.36
TRIM28-212ENST00000597995 FLNBO75369 2602 aaKnown RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 MGAQ8IWI9 3026 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 FAM170AA1A519 330 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 A6NNZ2 444 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 K7ERQ8 282 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 ERVH48-1M5A8F1 160 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 PES1O00541 588 aaKnown RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 EPHB6O15197 1021 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 FFAR2O15552 330 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 LZTS3O60299 673 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 PCDH8O95206 1070 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 F9P00740 461 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 CDH5P33151 784 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 KRT9P35527 623 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 GGCXP38435 758 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 RECQLP46063 649 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 LSSP48449 732 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 RPS21P63220 83 aaKnown RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 CXADRP78310 365 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 SLC20A2Q08357 652 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 NCAPHQ15003 741 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 TMEM259Q4ZIN3 620 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms