RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 CELF6Q96J87 481 aaKnown RBP15.31■□□□□ 0.04
TRIM28-207ENST00000597136 AP1M1Q9BXS5 423 aa15.31■□□□□ 0.04
TRIM28-207ENST00000597136 ACE2Q9BYF1 805 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-207ENST00000597136 RETREG1Q9H6L5 497 aa15.31■□□□□ 0.04
TRIM28-207ENST00000597136 SAE1Q9UBE0 346 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-207ENST00000597136 FBXO4Q9UKT5 387 aa15.31■□□□□ 0.04
TRIM28-207ENST00000597136 R3HDM2Q9Y2K5 976 aaKnown RBP15.31■□□□□ 0.04
TRIM28-207ENST00000597136 EP300Q09472 2414 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-207ENST00000597136 GPR179Q6PRD1 2367 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 TRPM6Q9BX84 2022 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 APOC4-APOC2K7ER74 178 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 CBX4O00257 560 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 KRIT1O00522 736 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 SMAD6O43541 496 aaKnown RBP15.3■□□□□ 0.04
TRIM28-207ENST00000597136 CD160O95971 181 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 APOC2P02655 101 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 SRPRAP08240 638 aaKnown RBP15.3■□□□□ 0.04
TRIM28-207ENST00000597136 TGM2P21980 687 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 CKAP4Q07065 602 aaKnown RBP15.3■□□□□ 0.04
TRIM28-207ENST00000597136 POLD3Q15054 466 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-207ENST00000597136 IL31Q6EBC2 164 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 ANO7Q6IWH7 933 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 NPNTQ6UXI9 565 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 UMODL1-AS1Q8N2C9 162 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 NPWQ8N729 165 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 HMGB4Q8WW32 186 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 SLC39A8Q9C0K1 460 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 MAGEH1Q9H213 219 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 ATP13A1Q9HD20 1204 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 FAM86C1Q9NVL1 165 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 DONSONQ9NYP3 566 aa15.3■□□□□ 0.04
TRIM28-207ENST00000597136 TCRBV21S2A2A0A5A6 115 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 RASA4BC9J798 803 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 NPC1O15118 1278 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 RASA4O43374 803 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 RAMP2O60895 175 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 PECAM1P16284 738 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-207ENST00000597136 GABRG2P18507 467 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 NR2C2P49116 596 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 DGKEP52429 567 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 ARF5P84085 180 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 GBE1Q04446 702 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 SULT2A1Q06520 285 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 SLC10A2Q12908 348 aaPredicted RBP15.29■□□□□ 0.04
TRIM28-207ENST00000597136 SRSF5Q13243 272 aaKnown RBP15.29■□□□□ 0.04
TRIM28-207ENST00000597136 ZNF783Q6ZMS7 281 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 ARHGAP12Q8IWW6 846 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 LZTR1Q8N653 840 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 PRELID2Q8N945 189 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 MDGA1Q8NFP4 955 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 TSTD1Q8NFU3 115 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 P3H4Q92791 437 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 NELL1Q92832 810 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 HAUS1Q96CS2 278 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 HMCESQ96FZ2 354 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 TPSD1Q9BZJ3 242 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 LRRC19Q9H756 370 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 PRSS16Q9NQE7 514 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 DTLQ9NZJ0 730 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 HEY1Q9Y5J3 304 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 LAMA1P25391 3075 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 ADAMTS9Q9P2N4 1935 aa15.29■□□□□ 0.04
TRIM28-207ENST00000597136 OTOGLQ3ZCN5 2332 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 MFSD11O43934 449 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 SRCP12931 536 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 SERPINB6P35237 376 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 ST8SIA6P61647 398 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 OTUD4Q01804 1114 aaKnown RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 DLG2Q15700 870 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 ACCSLQ4AC99 568 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 ARHGAP36Q6ZRI8 547 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 SH2D3CQ8N5H7 860 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 CAMKK1Q8N5S9 505 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 FRMD1Q8N878 549 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 DCAF4L2Q8NA75 395 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 TTC13Q8NBP0 860 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 SPATA4Q8NEY3 305 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 ACTL9Q8TC94 416 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 FRS2Q8WU20 508 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 C1orf54Q8WWF1 131 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 ATG4AQ8WYN0 398 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 PTPRN2Q92932 1015 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 PRRX2Q99811 253 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 FAM118BQ9BPY3 351 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 C2orf49Q9BVC5 232 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 MKRN2Q9H000 416 aaKnown RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 POLMQ9NP87 494 aaPredicted RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 CD93Q9NPY3 652 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 INVSQ9Y283 1065 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 HCN4Q9Y3Q4 1203 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 R4GN57 208 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 FAM186AA6NE01 2351 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 GOLGA6L10A0A0M3HER8 536 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 KDELR3O43731 214 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 SIN3BO75182 1162 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 APBB3O95704 486 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 NDUFV2P19404 249 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 HOXA6P31267 233 aa15.28■□□□□ 0.04
TRIM28-207ENST00000597136 PAPOLAP51003 745 aaKnown RBP15.28■□□□□ 0.04
TRIM28-207ENST00000597136 COPAP53621 1224 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms