RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TMIEQ8NEW7 156 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 CELF6Q96J87 481 aaKnown RBP15.32■□□□□ 0.04
UPF1-202ENST00000594243 GPR174Q9BXC1 333 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 PCED1AQ9H1Q7 454 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 FZD4Q9ULV1 537 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 GVINP1Q7Z2Y8 2422 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 BCLAF3A2AJT9 711 aaKnown RBP15.31■□□□□ 0.04
UPF1-202ENST00000594243 ZNF821O75541 412 aaPredicted RBP15.31■□□□□ 0.04
UPF1-202ENST00000594243 RNASEH2AO75792 299 aaKnown RBP15.31■□□□□ 0.04
UPF1-202ENST00000594243 PRNPP04156 253 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 SERPINB6P35237 376 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 GJC1P36383 396 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 MPLP40238 635 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 PTGER3P43115 390 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 PAPOLAP51003 745 aaKnown RBP15.31■□□□□ 0.04
UPF1-202ENST00000594243 DNA2P51530 1060 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 ARSEP51690 589 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 SNRPD1P62314 119 aaKnown RBP15.31■□□□□ 0.04
UPF1-202ENST00000594243 CCDC15Q0P6D6 951 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 CSRP2Q16527 193 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 AFMIDQ63HM1 303 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 RAD9BQ6WBX8 426 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 CYP2U1Q7Z449 544 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 HDDC3Q8N4P3 179 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 PIP4K2CQ8TBX8 421 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 TSC1Q92574 1164 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 CALN1Q9BXU9 219 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 KLC2Q9H0B6 622 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 TNKS2Q9H2K2 1166 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 SEMA4GQ9NTN9 838 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 IL36AQ9UHA7 158 aa15.31■□□□□ 0.04
UPF1-202ENST00000594243 FCF1Q9Y324 198 aaKnown RBP15.31■□□□□ 0.04
UPF1-202ENST00000594243 A0A1W2PP55 124 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 METTL12A8MUP2 240 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 DFFAO00273 331 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 ZNF806P0C7X5 589 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 IL4RP24394 825 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 ACSL1P33121 698 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 DPYSL3Q14195 570 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 ODF2Q5BJF6 829 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 WDR45BQ5MNZ6 344 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 PLA2G2CQ5R387 149 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 LRRC38Q5VT99 294 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 LEKR1Q6ZMV7 388 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 DPY19L3Q6ZPD9 716 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 ARMCX6Q7L4S7 300 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 CPNE8Q86YQ8 564 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 SYT12Q8IV01 421 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 TMEM139Q8IV31 216 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 RHOT1Q8IXI2 618 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 OR2AP1Q8NGE2 309 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 LRIG1Q96JA1 1093 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 HSPA12BQ96MM6 686 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 HEPHQ9BQS7 1158 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 ZNF670Q9BS34 389 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 NEUROG2Q9H2A3 272 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 VPS45Q9NRW7 570 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 DDX56Q9NY93 547 aaKnown RBP15.3■□□□□ 0.04
UPF1-202ENST00000594243 HECAQ9UBI9 543 aaPredicted RBP15.3■□□□□ 0.04
UPF1-202ENST00000594243 UBA2Q9UBT2 640 aaPredicted RBP15.3■□□□□ 0.04
UPF1-202ENST00000594243 SARDHQ9UL12 918 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 ACTL7AQ9Y615 435 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 ZNF292O60281 2723 aa15.3■□□□□ 0.04
UPF1-202ENST00000594243 PLXND1Q9Y4D7 1925 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 GOLGA6L3A6NEY3 463 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 BTNL10A8MVZ5 291 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 J3KR12 359 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 SLC7A4O43246 635 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 SPOPO43791 374 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 PRAMEF11O60813 436 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 POP4O95707 220 aaKnown RBP15.29■□□□□ 0.04
UPF1-202ENST00000594243 SEMA4FO95754 770 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 GSRP00390 522 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 CD48P09326 243 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 COMTP21964 271 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 TGM1P22735 817 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 KDELR1P24390 212 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 HOXD12P35452 270 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 VAV2P52735 878 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 RAD51Q06609 339 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 IL10RBQ08334 325 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 MMRN1Q13201 1228 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 RFTN1Q14699 578 aaPredicted RBP15.29■□□□□ 0.04
UPF1-202ENST00000594243 ANKRD20A8PQ5CZ79 823 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 ARSIQ5FYB1 569 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.29■□□□□ 0.04
UPF1-202ENST00000594243 RABEPKQ7Z6M1 372 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 KIAA1328Q86T90 577 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 SLC41A1Q8IVJ1 513 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 ARHGAP12Q8IWW6 846 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 KIAA2013Q8IYS2 634 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 RGL4Q8IZJ4 473 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 RYBPQ8N488 228 aaPredicted RBP15.29■□□□□ 0.04
UPF1-202ENST00000594243 AADATQ8N5Z0 425 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 NPWQ8N729 165 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 PIGKQ92643 395 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 PPP1R16AQ96I34 528 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 GRPEL1Q9HAV7 217 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 SP110Q9HB58 689 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 DYRK4Q9NR20 520 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms