RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 FAM133BQ5BKY9 247 aaKnown RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 MROH9Q5TGP6 573 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 TMCO4Q5TGY1 634 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PKN3Q6P5Z2 889 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 RANBP10Q6VN20 620 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 CCDC121Q6ZUS5 278 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 CHST9Q7L1S5 443 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 SPATA21Q7Z572 469 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 DNAJB7Q7Z6W7 309 aaPredicted RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 BBS5Q8N3I7 341 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 OTUD6BQ8N6M0 293 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 ATP2A3Q93084 1043 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PABPC5Q96DU9 382 aaKnown RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 ZNF419Q96HQ0 510 aaPredicted RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 APOL2Q9BQE5 337 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 FICDQ9BVA6 458 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PRKD2Q9BZL6 878 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 UGT1A7Q9HAW7 530 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 UGT1A10Q9HAW8 530 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 UGT1A8Q9HAW9 530 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PLLPQ9Y342 182 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 J3KR12 359 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 LILRB3O75022 631 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 STC2O76061 302 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 MT-CYBP00156 380 aaPredicted RBP14.41□□□□□ -0.1
LIG3-205ENST00000585941 ACRP10323 421 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 CTSAP10619 480 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 HSPA8P11142 646 aaKnown RBP14.41□□□□□ -0.1
LIG3-205ENST00000585941 ETFBP38117 255 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 HADHAP40939 763 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 ETV4P43268 484 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 HTRA4P83105 476 aaPredicted RBP14.41□□□□□ -0.1
LIG3-205ENST00000585941 PPIGQ13427 754 aaKnown RBP eCLIP14.41□□□□□ -0.14e-7■□□□□ 11.3
LIG3-205ENST00000585941 DBN1Q16643 649 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 ADGRF1Q5T601 910 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 DENND5AQ6IQ26 1287 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 TMCO2Q7Z6W1 182 aaPredicted RBP14.41□□□□□ -0.1
LIG3-205ENST00000585941 HERC6Q8IVU3 1022 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 UNC5BQ8IZJ1 945 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 FIBCD1Q8N539 461 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 ZNF75CPQ92670 426 aaPredicted RBP14.41□□□□□ -0.1
LIG3-205ENST00000585941 KLF16Q9BXK1 252 aaPredicted RBP14.41□□□□□ -0.1
LIG3-205ENST00000585941 NT5MQ9NPB1 228 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 ARL2BPQ9Y2Y0 163 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 PTPRSQ13332 1948 aa14.41□□□□□ -0.1
LIG3-205ENST00000585941 HMX2A2RU54 273 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 TIMM44O43615 452 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 PMPCBO75439 489 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 FGF18O76093 207 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 ITGA2BP08514 1039 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 ERVK-10P10266 1014 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 TPH1P17752 444 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 PAMP19021 973 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 CORO1AP31146 461 aaKnown RBP14.4□□□□□ -0.1
LIG3-205ENST00000585941 WNT3AP56704 352 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 CORO7P57737 925 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 PDE1BQ01064 536 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 SLC10A7Q0GE19 358 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 BMPR2Q13873 1038 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 LBRQ14739 615 aaKnown RBP14.4□□□□□ -0.1
LIG3-205ENST00000585941 ZKSCAN8Q15776 578 aaPredicted RBP14.4□□□□□ -0.1
LIG3-205ENST00000585941 TEDDM1Q5T9Z0 273 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 KDELC1Q6UW63 502 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 KYAT3Q6YP21 454 aaKnown RBP14.4□□□□□ -0.1
LIG3-205ENST00000585941 SETD3Q86TU7 594 aaPredicted RBP14.4□□□□□ -0.1
LIG3-205ENST00000585941 KCNMB4Q86W47 210 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 DENND1CQ8IV53 801 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 NDUFAF2Q8N183 169 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 GABPB2Q8TAK5 448 aaPredicted RBP14.4□□□□□ -0.1
LIG3-205ENST00000585941 MRGPRX2Q96LB1 330 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 FAM111AQ96PZ2 611 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 RBBP8Q99708 897 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 ZBP1Q9H171 429 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 CHRAC1Q9NRG0 131 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 C20orf96Q9NUD7 363 aaPredicted RBP14.4□□□□□ -0.1
LIG3-205ENST00000585941 SLC17A7Q9P2U7 560 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 PRKAG3Q9UGI9 489 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 DCDC2Q9UHG0 476 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 GRID1Q9ULK0 1009 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 PLXNA4Q9HCM2 1894 aa14.4□□□□□ -0.1
LIG3-205ENST00000585941 A0A1B0GVM2 712 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 ILVBLA1L0T0 632 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 TCAF2A6NFQ2 919 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 KLF11O14901 512 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 TEX28O15482 410 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 EDF1O60869 148 aaKnown RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 GLRA3O75311 464 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 FGBP02675 491 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 SLC6A4P31645 630 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 GNA12Q03113 381 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 ITKQ08881 620 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 RFTN1Q14699 578 aaPredicted RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 SLC14A2Q15849 920 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 UGP2Q16851 508 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 INSCQ1MX18 579 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 CES3Q6UWW8 571 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 CCDC149Q6ZUS6 474 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 OTOP2Q7RTS6 562 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 CLP1Q92989 425 aaKnown RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 ISL2Q96A47 359 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms