RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 C3orf70A6NLC5 250 aaPredicted RBP4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 RPP40O75818 363 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 ZNF432O94892 652 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 MYL3P08590 195 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 PTMSP20962 102 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 TNFSF4P23510 183 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 GRK5P34947 590 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 ART1P52961 327 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 PMS2P54278 862 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 MVPQ14764 893 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 COBLL1Q53SF7 1204 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 HSP90AB4PQ58FF6 505 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 FAM209BQ5JX69 171 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 GFI1BQ5VTD9 330 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 OTUD1Q5VV17 481 aaPredicted RBP4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 DCAF12L2Q5VW00 463 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 CCDC25Q86WR0 208 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 FAM217AQ8IXS0 508 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 KDM1BQ8NB78 822 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 NR4A3Q92570 626 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 ZNF566Q969W8 418 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 ICAM5Q9UMF0 924 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 SLC12A4Q9UP95 1085 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 CLTCL1P53675 1640 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 ABCC1P33527 1531 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 TRAPPC8Q9Y2L5 1435 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 SPAG9O60271 1321 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 SHPRHQ149N8 1683 aa4.45□□□□□ -1.7
SMCHD1-208ENST00000583344 FANCAO15360 1455 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 IQSEC2Q5JU85 1478 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 NSD2O96028 1365 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 USP32Q8NFA0 1604 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 GOLGA6L3A6NEY3 463 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 KCNJ18B7U540 433 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 PMM2O15305 246 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 GRID2O43424 1007 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 GAS8-AS1O95177 125 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 NTSR2O95665 410 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 ANXA6P08133 673 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 PKMP14618 531 aaKnown RBP4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 CHRNB2P17787 502 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 PAX3P23760 479 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 EEF1GP26641 437 aaKnown RBP4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 KLRK1P26718 216 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 HOXD3P31249 432 aaPredicted RBP4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 TNFSF8P32971 234 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 CLCN5P51795 746 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 TMPRSS3P57727 454 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 TMEM88Q6PEY1 159 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.44□□□□□ -1.72e-7■■■■□ 23.8
SMCHD1-208ENST00000583344 CLEC17AQ6ZS10 378 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 Q6ZSV7 163 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 TRABD2AQ86V40 505 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 IPO4Q8TEX9 1081 aaKnown RBP4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 CLEC4CQ8WTT0 213 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 REXO5Q96IC2 774 aaKnown RBP4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 CFAP53Q96M91 514 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 FRMD8Q9BZ67 464 aaPredicted RBP4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 RRAGDQ9NQL2 400 aaPredicted RBP4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 LMTK2Q8IWU2 1503 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 ADGRF5Q8IZF2 1346 aa4.44□□□□□ -1.7
SMCHD1-208ENST00000583344 IFT172Q9UG01 1749 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 ZNF518AQ6AHZ1 1483 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 MCIDASD6RGH6 385 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 FGF18O76093 207 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 PPP1R3DO95685 299 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 LCKP06239 509 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 CHRNA5P30532 468 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 SLC16A2P36021 539 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 ADPRHP54922 357 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 ZBTB16Q05516 673 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 ZRSR2Q15696 482 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 RAB30Q15771 203 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 ALDH1L2Q3SY69 923 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 DNTTIP2Q5QJE6 756 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 AFAP1Q8N556 730 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 TMEM217Q8N7C4 229 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 LRRC57Q8N9N7 239 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 CMASQ8NFW8 434 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 EVI5LQ96CN4 794 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 C18orf8Q96DM3 657 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 APOLD1Q96LR9 279 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 PLEKHF1Q96S99 279 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 NAA15Q9BXJ9 866 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 B3GNT4Q9C0J1 378 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 CDT1Q9H211 546 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 PNNQ9H307 717 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 CCDC134Q9H6E4 229 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 CATSPERBQ9H7T0 1116 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 ZNF556Q9HAH1 456 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 RNF146Q9NTX7 359 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 DDX19BQ9UMR2 479 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 MAGED2Q9UNF1 606 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 NCOA3Q9Y6Q9 1424 aa4.43□□□□□ -1.7
SMCHD1-208ENST00000583344 ABCC11Q96J66 1382 aa4.42□□□□□ -1.7
SMCHD1-208ENST00000583344 CYP3A7-CYP3A51PA0A087WV96 503 aa4.42□□□□□ -1.7
SMCHD1-208ENST00000583344 TRBV5-7A0A0A0MS05 114 aa4.42□□□□□ -1.7
SMCHD1-208ENST00000583344 A0A1B0GUV1 79 aa4.42□□□□□ -1.7
SMCHD1-208ENST00000583344 KIF28PB7ZC32 967 aa4.42□□□□□ -1.7
SMCHD1-208ENST00000583344 IPO8O15397 1037 aaKnown RBP4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms