RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ZNF821O75541 412 aaPredicted RBP15.15■□□□□ 0.02
SS18-212ENST00000579061 GJB3O75712 270 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 CD160O95971 181 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 CASP14P31944 242 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 ACVRL1P37023 503 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 RECQLP46063 649 aaPredicted RBP15.15■□□□□ 0.02
SS18-212ENST00000579061 AFF3P51826 1226 aaKnown RBP15.15■□□□□ 0.02
SS18-212ENST00000579061 ZNF135P52742 658 aaPredicted RBP15.15■□□□□ 0.02
SS18-212ENST00000579061 ZNF252P-AS1Q0IIN9 211 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 SLC14A1Q13336 389 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 POLD3Q15054 466 aaPredicted RBP15.15■□□□□ 0.02
SS18-212ENST00000579061 TEAD4Q15561 434 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 ERMARDQ5T6L9 678 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.15■□□□□ 0.02
SS18-212ENST00000579061 DNAAF5Q86Y56 855 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 PSTKQ8IV42 348 aaKnown RBP15.15■□□□□ 0.02
SS18-212ENST00000579061 OR14C36Q8NHC7 312 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.15■□□□□ 0.02
SS18-212ENST00000579061 DOCK9Q9BZ29 2069 aa15.15■□□□□ 0.02
SS18-212ENST00000579061 TP53BP1Q12888 1972 aaPredicted RBP15.15■□□□□ 0.02
SS18-212ENST00000579061 FAM47DPA6NHR8 397 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 KDELR3O43731 214 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 CREB3O43889 395 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 BNIP3LO60238 219 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 PRPSAP2O60256 369 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 CER1O95813 267 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 CTSLP07711 333 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 ADRB1P08588 477 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 ZNF883P0CG24 379 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 CEACAM1P13688 526 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 NUDT1P36639 197 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 METAP1P53582 386 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 RACK1P63244 317 aaKnown RBP15.14■□□□□ 0.01
SS18-212ENST00000579061 CNTN1Q12860 1018 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 CARD16Q5EG05 197 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 AGBL4Q5VU57 503 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 SPECC1LQ69YQ0 1117 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 UMODL1-AS1Q8N2C9 162 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 ARFGAP1Q8N6T3 406 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 CASKIN2Q8WXE0 1202 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 TM9SF3Q9HD45 589 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 IL36AQ9UHA7 158 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 AP4E1Q9UPM8 1137 aa15.14■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3DA0A087WVF3 549 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3IA0A087WXS9 549 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 A0A087X0T9 212 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3EA0A087X179 549 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3KA0A087X1G2 549 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3FA6NER0 549 aaPredicted RBP15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3LB9A6J9 549 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 LATO43561 262 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3HP0C7X1 549 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 FAM228BP0C875 321 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 MIPP30301 263 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 PCK1P35558 622 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 CSNK1EP49674 416 aaKnown RBP15.13■□□□□ 0.01
SS18-212ENST00000579061 NOVA1P51513 510 aaKnown RBP15.13■□□□□ 0.01
SS18-212ENST00000579061 TPI1P60174 286 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 BNC1Q01954 994 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 NFKBIBQ15653 356 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 PARP15Q460N3 678 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3GQ6DHY5 549 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3CQ6IPX1 549 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 NEK5Q6P3R8 708 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 ALKBH5Q6P6C2 394 aaKnown RBP15.13■□□□□ 0.01
SS18-212ENST00000579061 DPY19L3Q6ZPD9 716 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 PIP4P1Q86T03 277 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TRIM69Q86WT6 500 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TBC1D3Q8IZP1 549 aaPredicted RBP15.13■□□□□ 0.01
SS18-212ENST00000579061 TMEM131Q92545 1883 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 PPP1R16AQ96I34 528 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 HEPHQ9BQS7 1158 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 SNRNP25Q9BV90 132 aaKnown RBP15.13■□□□□ 0.01
SS18-212ENST00000579061 HDAC8Q9BY41 377 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 TRIM7Q9C029 511 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 SLC32A1Q9H598 525 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 NOL6Q9H6R4 1146 aaKnown RBP15.13■□□□□ 0.01
SS18-212ENST00000579061 PREBQ9HCU5 417 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 DYRK4Q9NR20 520 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 ARHGAP20Q9P2F6 1191 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 MYO1AQ9UBC5 1043 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 WASF2Q9Y6W5 498 aa15.13■□□□□ 0.01
SS18-212ENST00000579061 A0A1B0GVT2 93 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 RASA4BC9J798 803 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 KPNA3O00505 521 aaPredicted RBP15.12■□□□□ 0.01
SS18-212ENST00000579061 RASA4O43374 803 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 LRCH4O75427 683 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 GSRP00390 522 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 HNRNPDQ14103 355 aaKnown RBP15.12■□□□□ 0.01
SS18-212ENST00000579061 PIGHQ14442 188 aaPredicted RBP15.12■□□□□ 0.01
SS18-212ENST00000579061 INO80DQ53TQ3 878 aaPredicted RBP15.12■□□□□ 0.01
SS18-212ENST00000579061 ARSIQ5FYB1 569 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 PIP5KL1Q5T9C9 394 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 PSAPL1Q6NUJ1 521 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 CYP4V2Q6ZWL3 525 aaPredicted RBP15.12■□□□□ 0.01
SS18-212ENST00000579061 PRPF39Q86UA1 669 aaKnown RBP15.12■□□□□ 0.01
SS18-212ENST00000579061 CHST14Q8NCH0 376 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 OR8K1Q8NGG5 319 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 SKA1Q96BD8 255 aa15.12■□□□□ 0.01
SS18-212ENST00000579061 LRIG1Q96JA1 1093 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms