RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 CTSLP07711 333 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 ITPKAP23677 461 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 HOXD12P35452 270 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 DRD3P35462 400 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 CYLC1P35663 651 aaPredicted RBP19.7■□□□□ 0.74
SS18-208ENST00000577751 ARL4AP40617 200 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 PSMD8P48556 350 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 ARSEP51690 589 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 TAS2R40P59535 323 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 INO80DQ53TQ3 878 aaPredicted RBP19.7■□□□□ 0.74
SS18-208ENST00000577751 FAM46CQ5VWP2 391 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 ARHGAP12Q8IWW6 846 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 PIP4K2CQ8TBX8 421 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 DNASE2BQ8WZ79 361 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 PIGKQ92643 395 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 HSPA12BQ96MM6 686 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 CSPG4P5Q96PW8 444 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 SLC39A8Q9C0K1 460 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 NEUROG2Q9H2A3 272 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 TNKS2Q9H2K2 1166 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 FARP1Q9Y4F1 1045 aaPredicted RBP19.7■□□□□ 0.74
SS18-208ENST00000577751 EPN1Q9Y6I3 576 aaPredicted RBP19.7■□□□□ 0.74
SS18-208ENST00000577751 WDR87Q6ZQQ6 2873 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 CFAP54Q96N23 3096 aa19.7■□□□□ 0.74
SS18-208ENST00000577751 SOWAHDA6NJG2 315 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 BNIP3LO60238 219 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 SEMA4FO95754 770 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 IL4RP24394 825 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 CHRNA3P32297 505 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 METAP1P53582 386 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 HADHBP55084 474 aaKnown RBP19.69■□□□□ 0.74
SS18-208ENST00000577751 MESDQ14696 234 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 ATP13A4Q4VNC1 1196 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 CARD16Q5EG05 197 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 DPY19L3Q6ZPD9 716 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 HDDC3Q8N4P3 179 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 LZTR1Q8N653 840 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 NPWQ8N729 165 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 CHST14Q8NCH0 376 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 TMIEQ8NEW7 156 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 CASKIN2Q8WXE0 1202 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 CELF6Q96J87 481 aaKnown RBP19.69■□□□□ 0.74
SS18-208ENST00000577751 OMDQ99983 421 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 SMOC1Q9H4F8 434 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 PDFQ9HBH1 243 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 RCOR3Q9P2K3 495 aaPredicted RBP19.69■□□□□ 0.74
SS18-208ENST00000577751 PCDHA13Q9Y5I0 950 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.69■□□□□ 0.74
SS18-208ENST00000577751 GON4LQ3T8J9 2241 aa19.69■□□□□ 0.74
SS18-208ENST00000577751 C1QTNF3-AMACRE9PGA6 284 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 BUB1O43683 1085 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 NDUFA10O95299 355 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 KRT7P08729 469 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 AMPD1P23109 780 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 SSR1P43307 286 aaKnown RBP19.68■□□□□ 0.74
SS18-208ENST00000577751 RECQLP46063 649 aaPredicted RBP19.68■□□□□ 0.74
SS18-208ENST00000577751 CDH6P55285 790 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 SF3A2Q15428 464 aaKnown RBP19.68■□□□□ 0.74
SS18-208ENST00000577751 SYCP2LQ5T4T6 812 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 LEKR1Q6ZMV7 388 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 TMEM139Q8IV31 216 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 GANCQ8TET4 914 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 VOPP1Q96AW1 172 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 C6orf106Q9H6K1 298 aaPredicted RBP19.68■□□□□ 0.74
SS18-208ENST00000577751 ETNK2Q9NVF9 386 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 IL36AQ9UHA7 158 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 EVLQ9UI08 416 aaPredicted RBP19.68■□□□□ 0.74
SS18-208ENST00000577751 WASF2Q9Y6W5 498 aa19.68■□□□□ 0.74
SS18-208ENST00000577751 ARHGAP42A6NI28 874 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 PATE3B3GLJ2 98 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 RNF103O00237 685 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 PRAMEF11O60813 436 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 RNASEH2AO75792 299 aaKnown RBP19.67■□□□□ 0.74
SS18-208ENST00000577751 PRNPP04156 253 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 CD48P09326 243 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 PAPOLAP51003 745 aaKnown RBP19.67■□□□□ 0.74
SS18-208ENST00000577751 LMNB2Q03252 620 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 SPA17Q15506 151 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 WDR45BQ5MNZ6 344 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 DCAF12L1Q5VU92 463 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 RAD9BQ6WBX8 426 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 ZNF354CQ86Y25 554 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 HEPHQ9BQS7 1158 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 MFHAS1Q9Y4C4 1052 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 PI4KAP42356 2102 aa19.67■□□□□ 0.74
SS18-208ENST00000577751 A0A0A6YYK5 440 aaPredicted RBP19.66■□□□□ 0.74
SS18-208ENST00000577751 TMEM110-MUSTN1A8MSY1 372 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 J3KR12 359 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 KHNYNO15037 678 aaKnown RBP19.66■□□□□ 0.74
SS18-208ENST00000577751 SLC7A4O43246 635 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 TMCC1O94876 653 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 GSRP00390 522 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 MAOBP27338 520 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 DNA2P51530 1060 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 CCNHP51946 323 aaPredicted RBP19.66■□□□□ 0.74
SS18-208ENST00000577751 SNRPD1P62314 119 aaKnown RBP19.66■□□□□ 0.74
SS18-208ENST00000577751 DPYSL3Q14195 570 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 KRT81Q14533 505 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 PDK2Q15119 407 aa19.66■□□□□ 0.74
SS18-208ENST00000577751 ARSIQ5FYB1 569 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms