RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ADAM9Q13443 819 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 CUL4AQ13619 759 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 TMEM259Q4ZIN3 620 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 PRRT3Q5FWE3 981 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 RABGAP1LQ5R372 815 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 SYPL2Q5VXT5 272 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 CXorf57Q6NSI4 855 aaKnown RBP16.57■□□□□ 0.24
CLK3-223ENST00000568488 ESRP1Q6NXG1 681 aaKnown RBP16.57■□□□□ 0.24
CLK3-223ENST00000568488 LCLAT1Q6UWP7 414 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 ERN2Q76MJ5 926 aaKnown RBP16.57■□□□□ 0.24
CLK3-223ENST00000568488 RBFAQ8N0V3 343 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 ATP11CQ8NB49 1132 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 BTN2A2Q8WVV5 523 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 TFAP2BQ92481 460 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 CCDC114Q96M63 670 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 GFM1Q96RP9 751 aaKnown RBP16.57■□□□□ 0.24
CLK3-223ENST00000568488 FEM1AQ9BSK4 669 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 TCEAL2Q9H3H9 227 aaPredicted RBP16.57■□□□□ 0.24
CLK3-223ENST00000568488 GPR27Q9NS67 375 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 SLC12A6Q9UHW9 1150 aa16.57■□□□□ 0.24
CLK3-223ENST00000568488 UTP20O75691 2785 aaKnown RBP16.57■□□□□ 0.24
CLK3-223ENST00000568488 BLACEA4D250 179 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 TCAF2A6NFQ2 919 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 TMX2-CTNND1H3BSU7 103 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 RNF103O00237 685 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 NTN3O00634 580 aaPredicted RBP16.56■□□□□ 0.24
CLK3-223ENST00000568488 FPGTO14772 594 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 SPINT1O43278 529 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 GCATO75600 419 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 WT1P19544 449 aaPredicted RBP16.56■□□□□ 0.24
CLK3-223ENST00000568488 NOS2P35228 1153 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 RPS21P63220 83 aaKnown RBP16.56■□□□□ 0.24
CLK3-223ENST00000568488 FOXK1P85037 733 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 LRMPQ12912 555 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 EIF2B5Q13144 721 aaKnown RBP16.56■□□□□ 0.24
CLK3-223ENST00000568488 FGL2Q14314 439 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 C8orf34Q49A92 452 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 ARSIQ5FYB1 569 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 TPRG1LQ5T0D9 272 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 ZFAND4Q86XD8 727 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 FAM26EQ8N5C1 309 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 ATP6V0D2Q8N8Y2 350 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 CHST14Q8NCH0 376 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 TMIEQ8NEW7 156 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 ZNF564Q8TBZ8 553 aaPredicted RBP16.56■□□□□ 0.24
CLK3-223ENST00000568488 GRIN3AQ8TCU5 1115 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 HTR3CQ8WXA8 447 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 ALG14Q96F25 216 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 PAGE5Q96GU1 130 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 FEM1CQ96JP0 617 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 HSFY1Q96LI6 401 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 PSMG3-AS1Q96PY0 264 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 LRRC4CQ9HCJ2 640 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 APOBEC3BQ9UH17 382 aaKnown RBP16.56■□□□□ 0.24
CLK3-223ENST00000568488 ACSL6Q9UKU0 697 aa16.56■□□□□ 0.24
CLK3-223ENST00000568488 SPTAN1Q13813 2472 aaKnown RBP16.55■□□□□ 0.24
CLK3-223ENST00000568488 KCNU1A8MYU2 1149 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 NVLO15381 856 aaKnown RBP16.55■□□□□ 0.24
CLK3-223ENST00000568488 STX10O60499 249 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 MT-CO1P00395 513 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 PRNPP04156 253 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 SRCP12931 536 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 CCL7P80098 99 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 SGCGQ13326 291 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 MORC3Q14149 939 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 NCAPHQ15003 741 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 TTC39BQ5VTQ0 682 aaPredicted RBP16.55■□□□□ 0.24
CLK3-223ENST00000568488 HIST2H2BCQ6DN03 193 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 OR52K2Q8NGK3 314 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 OR2A12Q8NGT7 310 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 RPRD1AQ96P16 312 aaPredicted RBP16.55■□□□□ 0.24
CLK3-223ENST00000568488 ST7Q9NRC1 585 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 SIRPGQ9P1W8 387 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 NOTCH2Q04721 2471 aa16.55■□□□□ 0.24
CLK3-223ENST00000568488 PRAMEF33A0A0G2JMD5 474 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 K7ERQ8 282 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 YY2O15391 372 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 PRAMEF10O60809 474 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 YEATS4O95619 227 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 ITIH1P19827 911 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 MAPK10P53779 464 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 CENPCQ03188 943 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 NFIL3Q16649 462 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 FAXCQ5TGI0 409 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 TCERG1LQ5VWI1 586 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 KIAA1161Q6NSJ0 714 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 TMEM270Q6UE05 265 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 SDR16C5Q8N3Y7 309 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 PPP1R16AQ96I34 528 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 TMEM74Q96NL1 305 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 FUCA2Q9BTY2 467 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 HDAC8Q9BY41 377 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 CPEB1Q9BZB8 566 aaKnown RBP16.54■□□□□ 0.24
CLK3-223ENST00000568488 SLC13A1Q9BZW2 595 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 MUC3BQ9H195 1237 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 FOXD4L1Q9NU39 408 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLK3-223ENST00000568488 DOLKQ9UPQ8 538 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 LOXL2Q9Y4K0 774 aa16.54■□□□□ 0.24
CLK3-223ENST00000568488 SYNJ2BP-COX16A0A087WUM0 186 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms