RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 OPTNQ96CV9 577 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 C19orf60Q96EN9 201 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 Q96MF0 132 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 TMEM237Q96Q45 408 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 WDR24Q96S15 920 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SMC6Q96SB8 1091 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SIN3AQ96ST3 1273 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SECISBP2Q96T21 854 aaKnown RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 TREX2Q9BQ50 279 aaPredicted RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 SLF1Q9BQI6 1058 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 HAUS8Q9BT25 410 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 TBCDQ9BTW9 1192 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 ACAT2Q9BWD1 397 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 TXLNGYQ9BZA5 131 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SIL1Q9H173 461 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 STN1Q9H668 368 aaKnown RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 RIOX1Q9H6W3 641 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SYNPO2LQ9H987 977 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 PANK3Q9H999 370 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 C12orf10Q9HB07 376 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 PLSCR4Q9NRQ2 329 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 SIDT1Q9NXL6 827 aaKnown RBP5.29□□□□□ -1.56
VPS35-205ENST00000563984 TMCO1Q9UM00 188 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 MAP3K5Q99683 1374 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 NPC1L1Q9UHC9 1359 aa5.29□□□□□ -1.56
VPS35-205ENST00000563984 TTC41PQ6P2S7 1318 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 WDR19Q8NEZ3 1342 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 A0A1W2PS29 197 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 ERICH2A1L162 156 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 KRT87PA6NCN2 255 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 OR5K4A6NMS3 321 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 DDX39AO00148 427 aaKnown RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 RPS6KA5O75582 802 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 CRTAPO75718 401 aaPredicted RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 FGF18O76093 207 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 KLHL2O95198 593 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 STARD3NLO95772 234 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 CHRNA1P02708 482 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 ANXA1P04083 346 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 EIF2S1P05198 315 aaKnown RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 ALOX5P09917 674 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 UBTFL6P0CB48 400 aaPredicted RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 HLA-DPA1P20036 260 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 HNMTP50135 292 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 DSC2Q02487 901 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 RNASELQ05823 741 aaKnown RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 KDSRQ06136 332 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 ZNF844Q08AG5 666 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 MOGQ16653 247 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 WLSQ5T9L3 541 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 CEP85Q6P2H3 762 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 AAGABQ6PD74 315 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 Q6ZNX1 250 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 ZNF365Q70YC5 407 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 BHLHA9Q7RTU4 235 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 VPS36Q86VN1 386 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 SYCP3Q8IZU3 236 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 OR8H3Q8N146 312 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 LNX2Q8N448 690 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 WASF1Q92558 559 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 RUBCNQ92622 972 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 USP13Q92995 863 aaPredicted RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 PTCD3Q96EY7 689 aaKnown RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 ABHD8Q96I13 439 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 UBXN10Q96LJ8 280 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 TCEANC2Q96MN5 208 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 EYA3Q99504 573 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 SELENOSQ9BQE4 189 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 SIKE1Q9BRV8 207 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 NUF2Q9BZD4 464 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 ACPTQ9BZG2 426 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS35-205ENST00000563984 AGO4Q9HCK5 861 aaKnown RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 ATAD3AQ9NVI7 634 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 COX16Q9P0S2 106 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 IFT80Q9P2H3 777 aaPredicted RBP5.28□□□□□ -1.56
VPS35-205ENST00000563984 FETUBQ9UGM5 382 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 ANAPC5Q9UJX4 755 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 POLHQ9Y253 713 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 SH3GLB1Q9Y371 365 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 PCDHGB5Q9Y5G0 923 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS35-205ENST00000563984 CAPN7Q9Y6W3 813 aa5.28□□□□□ -1.56
VPS35-205ENST00000563984 ARHGEF17Q96PE2 2063 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 TRGV11A0A075B6L2 103 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 MACROD2A1Z1Q3 448 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 HTR3EA5X5Y0 456 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 SLC9B1P1A6NJY1 282 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 H0YIV9 168 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 H3BQV1 296 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 LIN7AO14910 233 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 SLC16A6O15403 523 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 SMAD6O43541 496 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 KERAO60938 352 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 DTNBO60941 627 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 TBX18O95935 607 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 APOEP02649 317 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 CYP3A4P08684 503 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 DDX5P17844 614 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 MALP21145 153 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms