RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TMPRSS12Q86WS5 348 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 PCDH20Q8N6Y1 951 aaKnown RBP17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 EMC1Q8N766 993 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 CHST14Q8NCH0 376 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 GPT2Q8TD30 523 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 RXFP2Q8WXD0 754 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 TSC1Q92574 1164 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 ARRDC3Q96B67 414 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 FAM207AQ9NSI2 230 aaPredicted RBP17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 LIMA1Q9UHB6 759 aaKnown RBP17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 WASF2Q9Y6W5 498 aa17.59■□□□□ 0.41
VPS9D1-203ENST00000563798 RNF103O00237 685 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 KPNA3O00505 521 aaPredicted RBP17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ENC1O14682 589 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 BNIP3LO60238 219 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 LDOC1O95751 146 aaPredicted RBP17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 CD160O95971 181 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 GLDCP23378 1020 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 SDC4P31431 198 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ETFBP38117 255 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 MAPKAPK2P49137 400 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ARF5P84085 180 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ATP11AP98196 1134 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ZNF284Q2VY69 593 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ARL13BQ3SXY8 428 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 DPY19L3Q6ZPD9 716 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ERN2Q76MJ5 926 aaKnown RBP17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 NLRP14Q86W24 1093 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 HORMAD1Q86X24 394 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 PHF13Q86YI8 300 aaPredicted RBP17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ISG20Q96AZ6 181 aaKnown RBP17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 PPP1R16AQ96I34 528 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 CNDP2Q96KP4 475 aaKnown RBP17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 PCDHB18PQ96TA0 734 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ATP13A1Q9HD20 1204 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 NLRC4Q9NPP4 1024 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 OR12D3Q9UGF7 316 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 IL36AQ9UHA7 158 aa17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 ANKRD11Q6UB99 2663 aaPredicted RBP17.58■□□□□ 0.4
VPS9D1-203ENST00000563798 A0A1W2PQU0 124 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 GOLGA8CPA6NN73 597 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 LGALS16A8MUM7 142 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 CBX4O00257 560 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 RHOQP17081 205 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 RECQLP46063 649 aaPredicted RBP17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 COPB1P53618 953 aaKnown RBP17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 BNIP3Q12983 259 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 TMEM259Q4ZIN3 620 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 RAB6CQ53S08 254 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 CARD16Q5EG05 197 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 ARSIQ5FYB1 569 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 JOSD2Q8TAC2 188 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 SLC30A5Q8TAD4 765 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 FAM174AQ8TBP5 190 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 NTAN1Q96AB6 310 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 KLHDC7BQ96G42 594 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 C11orf70Q9BRQ4 267 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 SPON2Q9BUD6 331 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 RAB6CQ9H0N0 254 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 DYRK4Q9NR20 520 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 ANO10Q9NW15 660 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 TMEM248Q9NWD8 314 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 NEU3Q9UQ49 428 aa17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 DSPP15924 2871 aaKnown RBP17.57■□□□□ 0.4
VPS9D1-203ENST00000563798 LEFTY1O75610 366 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 KRT3P12035 628 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 ITGB7P26010 798 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 ACADVLP49748 655 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 MYL5Q02045 173 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 ILKQ13418 452 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 SYCP1Q15431 976 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 C15orf59Q2T9L4 293 aaPredicted RBP17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 DHRS13Q6UX07 377 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 ZSCAN30Q86W11 494 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 EID2Q8N6I1 236 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 PDCD7Q8N8D1 485 aaKnown RBP17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 ERGIC2Q96RQ1 377 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 HEPHQ9BQS7 1158 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 MAGEH1Q9H213 219 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 TNKS2Q9H2K2 1166 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 KLHL11Q9NVR0 708 aa17.56■□□□□ 0.4
VPS9D1-203ENST00000563798 CHD5Q8TDI0 1954 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 TCRBV5S1A1TA0A578 114 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 FAM170AA1A519 330 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 TRABD2BA6NFA1 517 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 FAM72CH0Y354 149 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 AP1G1O43747 822 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 RFPL3O75679 317 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 HNRNPA2B1P22626 353 aaKnown RBP17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 AKT2P31751 481 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 L1CAMP32004 1257 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 RFC1P35251 1148 aaPredicted RBP17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 ANP32AP39687 249 aaKnown RBP17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 NSFP46459 744 aaKnown RBP17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 NEK3P51956 506 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 HDAC4P56524 1084 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 GEMIN4P57678 1058 aaKnown RBP17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 CLEC16AQ2KHT3 1053 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 FAM72AQ5TYM5 149 aa17.55■□□□□ 0.4
VPS9D1-203ENST00000563798 FAM72DQ6L9T8 149 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms