RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PLAC1Q9HBJ0 212 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 ATP13A1Q9HD20 1204 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 RABGEF1Q9UJ41 708 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 AAR2Q9Y312 384 aaKnown RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 TTC24A2A3L6 582 aaPredicted RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 SDR42E2A6NKP2 422 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 TCEA3O75764 348 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 PRAMEF12O95522 483 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 CEBPBP17676 345 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 OXCT1P55809 520 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 LBRQ14739 615 aaKnown RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 EFTUD2Q15029 972 aaKnown RBP eCLIP21.65■■□□□ 1.063e-6■■■■□ 22
CLN3-209ENST00000561689 PGBD5Q8N414 524 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 DNAAF3Q8N9W5 541 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 IPMKQ8NFU5 416 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 LMAN2LQ9H0V9 348 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 IGFLR1Q9H665 355 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 LRRC40Q9H9A6 602 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 TDP1Q9NUW8 608 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 PLK2Q9NYY3 685 aa21.65■■□□□ 1.06
CLN3-209ENST00000561689 MRPS23Q9Y3D9 190 aaKnown RBP21.65■■□□□ 1.06
CLN3-209ENST00000561689 POC1B-GALNT4F8VUJ3 575 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 PMPCBO75439 489 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 ANXA9O76027 345 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 IVLP07476 585 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 TSHRP16473 764 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 IFNAR2P48551 515 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 TMCO4Q5TGY1 634 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 AGBL2Q5U5Z8 902 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 CROCCP2Q86T23 111 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 ITFG1Q8TB96 612 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 WFDC5Q8TCV5 224 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 STAMBPL1Q96FJ0 436 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 XPO6Q96QU8 1125 aaKnown RBP21.64■■□□□ 1.05
CLN3-209ENST00000561689 SYBUQ9NX95 663 aa21.64■■□□□ 1.05
CLN3-209ENST00000561689 TCRBV9S1A1TA0A576 114 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 CBX4O00257 560 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 KDELR3O43731 214 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 LUC7L3O95232 432 aaKnown RBP21.63■■□□□ 1.05
CLN3-209ENST00000561689 GCAP28676 217 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 MAGOHP61326 146 aaKnown RBP21.63■■□□□ 1.05
CLN3-209ENST00000561689 CDH18Q13634 790 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 UNC5AQ6ZN44 842 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 KDELC2Q7Z4H8 507 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 KLHDC8BQ8IXV7 354 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 SLC25A51Q9H1U9 297 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 CASS4Q9NQ75 786 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 TBK1Q9UHD2 729 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 E2F8A0AVK6 867 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 ZNF197O14709 1029 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 AGTP01019 485 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 MZF1P28698 734 aaPredicted RBP21.63■■□□□ 1.05
CLN3-209ENST00000561689 DSC2Q02487 901 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 NIPAL4Q0D2K0 466 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 PRPF39Q86UA1 669 aaKnown RBP21.63■■□□□ 1.05
CLN3-209ENST00000561689 CPXM2Q8N436 756 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 FAM76AQ8TAV0 307 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 ACE2Q9BYF1 805 aaPredicted RBP21.63■■□□□ 1.05
CLN3-209ENST00000561689 ACSS3Q9H6R3 686 aa21.63■■□□□ 1.05
CLN3-209ENST00000561689 DENND4CQ5VZ89 1909 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 MUSKO15146 869 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 PSMD3O43242 534 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 GJB3O75712 270 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 POU2F2P09086 479 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 TPH1P17752 444 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 HPDP32754 393 aaPredicted RBP21.62■■□□□ 1.05
CLN3-209ENST00000561689 GEMP55040 296 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 NAPEPLDQ6IQ20 393 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 MFN1Q8IWA4 741 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 IMP4Q96G21 291 aaKnown RBP21.62■■□□□ 1.05
CLN3-209ENST00000561689 FICDQ9BVA6 458 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 CLEC4EQ9ULY5 219 aa21.62■■□□□ 1.05
CLN3-209ENST00000561689 FOXO6A8MYZ6 492 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 CD86P42081 329 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 PPARDQ03181 441 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 KCNC3Q14003 757 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 ZNF235Q14590 738 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 PCSK7Q16549 785 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 MPPE1Q53F39 396 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 CERCAMQ5T4B2 595 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 ZNF771Q7L3S4 317 aaPredicted RBP21.61■■□□□ 1.05
CLN3-209ENST00000561689 ARID3BQ8IVW6 561 aaPredicted RBP21.61■■□□□ 1.05
CLN3-209ENST00000561689 CYP4X1Q8N118 509 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 TIFAQ96CG3 184 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 TLCD1Q96CP7 247 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 ZNF599Q96NL3 588 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 TBL1YQ9BQ87 522 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 FEM1AQ9BSK4 669 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 APOL5Q9BWW9 433 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 UBA2Q9UBT2 640 aaPredicted RBP21.61■■□□□ 1.05
CLN3-209ENST00000561689 NOTCH4Q99466 2003 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 SNAP91O60641 907 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 CDH16O75309 829 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 SPAG6O75602 509 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 CSKP41240 450 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 TNK2Q07912 1038 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 IHHQ14623 411 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 MRGPRX2Q96LB1 330 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 FSD1LQ9BXM9 530 aa21.61■■□□□ 1.05
CLN3-209ENST00000561689 BFARQ9NZS9 450 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 805.5 ms