RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 REEP2Q9BRK0 252 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 POLR3CQ9BUI4 534 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 TMEM109Q9BVC6 243 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 TANGO6Q9C0B7 1094 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GPR88Q9GZN0 384 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 UBA5Q9GZZ9 404 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 RAB17Q9H0T7 212 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CARD9Q9H257 536 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GSTO2Q9H4Y5 243 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 DNAJC18Q9H819 358 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CNOT10Q9H9A5 744 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 CD209Q9NNX6 404 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 DDX4Q9NQI0 724 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 ZDHHC18Q9NUE0 388 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 TMEM140Q9NV12 185 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GRHL1Q9NZI5 618 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 GCNT4Q9P109 453 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 NYAP2Q9P242 653 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SEL1LQ9UBV2 794 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CNOT8Q9UFF9 292 aaKnown RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 ARMCX3Q9UH62 379 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 PCDHA12Q9UN75 941 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 SLC12A4Q9UP95 1085 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 CAPN7Q9Y6W3 813 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PHIPQ8WWQ0 1821 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 MGAMO43451 1857 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 RALGAPA2Q2PPJ7 1873 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PFASO15067 1338 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 AFF2P51816 1311 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 FRMPD2Q68DX3 1309 aaPredicted RBP2.62□□□□□ -1.99
SPG11-223ENST00000560858 IGSF9BQ9UPX0 1349 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PTPRFP10586 1907 aa2.62□□□□□ -1.99
SPG11-223ENST00000560858 PAPPA2Q9BXP8 1791 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 BRCA1P38398 1863 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 IGLV3-22A0A075B6J6 115 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 GOLGA6L10A0A0M3HER8 536 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 GOLGA6L7A0A1B0GV03 622 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 LCHNA4D1U4 455 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 GMNCA6NCL1 334 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TMCO5BA8MYB1 307 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 MIF4GDA9UHW6 222 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 RSPH10B2B2RC85 870 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 E7EVH7 732 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 MEIS2O14770 477 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 KIAA0391O15091 583 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 CHUKO15111 745 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 MAPK13O15264 365 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PMM2O15305 246 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TTI1O43156 1089 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TGFB1I1O43294 461 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CEP104O60308 925 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 KDM1AO60341 852 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TBCAO75347 108 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 AKAP3O75969 853 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 EYA4O95677 639 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 GGPS1O95749 300 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 LPLP06858 475 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CYP3A4P08684 503 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 H2AFZP0C0S5 128 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 RSPH10BP0C881 870 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 KCNA2P16389 499 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 VCAM1P19320 739 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CTNNA1P35221 906 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 SOX5P35711 763 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 EPS15P42566 896 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 ALDH1A3P47895 512 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 FMO5P49326 533 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CASP4P49662 377 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 GUCY2FP51841 1108 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 MRPL12P52815 198 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 GALCP54803 685 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 DRG2P55039 364 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 LINC00205P59089 165 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 FKBP1AP62942 108 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 IRX3P78415 501 aaPredicted RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 MYL7Q01449 175 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 DSG1Q02413 1049 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 KLRC3Q07444 240 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 IFFO1Q0D2I5 559 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PPP2R5CQ13362 524 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 MYBPC2Q14324 1141 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 HLTFQ14527 1009 aaKnown RBP eCLIP2.61□□□□□ -1.99
SPG11-223ENST00000560858 KRT81Q14533 505 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 ITIH4Q14624 930 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PLS1Q14651 629 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PPP2R5AQ15172 486 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TRADDQ15628 312 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 KRT71Q3SY84 523 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 HERC4Q5GLZ8 1057 aaPredicted RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 ERMARDQ5T6L9 678 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PRAMEF17Q5VTA0 474 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TTC19Q6DKK2 380 aaPredicted RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 CYB5D1Q6P9G0 228 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 B3GNT9Q6UX72 402 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CCDC121Q6ZUS5 278 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 Q6ZVL8 140 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 H2AFVQ71UI9 128 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PEX26Q7Z412 305 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CROCCP2Q86T23 111 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 VPS36Q86VN1 386 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms