RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 FAM50BQ9Y247 325 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ZNFX1Q9P2E3 1918 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 A0A1B0GVM2 712 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 TCAF2A6NFQ2 919 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 NDUFAB1O14561 156 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 PMM2O15305 246 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SH3BGRLO75368 114 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 KRT37O76014 449 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ARHGEF15O94989 841 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 NFATC1O95644 943 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 POLBP06746 335 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 BRAFP15056 766 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ITIH2P19823 946 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SLC8A1P32418 973 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 PTPN9P43378 593 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 FNTAP49354 379 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 IRAK1P51617 712 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 GEMP55040 296 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 WNT3AP56704 352 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 LPAL2Q16609 132 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 MPPE1Q53F39 396 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 DCAF12L1Q5VU92 463 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 NAPRTQ6XQN6 538 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 CEP128Q6ZU80 1094 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 FRA10AC1Q70Z53 315 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 POLNQ7Z5Q5 900 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 MTERF4Q7Z6M4 381 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ARFGAP2Q8N6H7 521 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 OR14C36Q8NHC7 312 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 FBF1Q8TES7 1133 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 EXOC4Q96A65 974 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 NPY6RQ99463 290 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF670Q9BS34 389 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 CDC42EP4Q9H3Q1 356 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 AASDHPPTQ9NRN7 309 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 DNMT3BQ9UBC3 853 aaKnown RBP5.54□□□□□ -1.52
VPS13C-209ENST00000560637 FBXO10Q9UK96 956 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 FZD10Q9ULW2 581 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 SCML2Q9UQR0 700 aa5.54□□□□□ -1.52
VPS13C-209ENST00000560637 C2orf81A6NN90 581 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PDZK1P1A8MUH7 402 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PLK4O00444 970 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 COPEO14579 308 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 CLDN11O75508 207 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 STC2O76061 302 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PRAMEF12O95522 483 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ARSAP15289 507 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 NFKBIAP25963 317 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ATP5DP30049 168 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 MLLT6P55198 1093 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TFF2Q03403 129 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 GAD2Q05329 585 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 GPNMBQ14956 572 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ACAP1Q15027 740 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 CNGA3Q16281 694 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 EMC10Q5UCC4 262 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ANKRD22Q5VYY1 191 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF470Q6ECI4 717 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 GRAMD4Q6IC98 578 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 EMBQ6PCB8 327 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 GAREM2Q75VX8 874 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SLC43A3Q8NBI5 491 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 RNF31Q96EP0 1072 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SPATA17Q96L03 361 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 CALR3Q96L12 384 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 HERPUD2Q9BSE4 406 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SPATA16Q9BXB7 569 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 CYP4F12Q9HCS2 524 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PFDN4Q9NQP4 134 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ACSS2Q9NR19 701 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 MTSS1O43312 755 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 MTX2O75431 263 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 MT-CO1P00395 513 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 CXCL10P02778 98 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 POU5F1Q01860 360 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ZNF252P-AS1Q0IIN9 211 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SGCGQ13326 291 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 CTBP1Q13363 440 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PDAP1Q13442 181 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 LBRQ14739 615 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PTPRCAPQ14761 206 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 FASTKD3Q14CZ7 662 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 GLE1Q53GS7 698 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 FBXO48Q5FWF7 155 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TRNP1Q6NT89 227 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 FAM151BQ6UXP7 276 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PRKD2Q9BZL6 878 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 CTNNAL1Q9UBT7 734 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TLR6Q9Y2C9 796 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 A0A0A0MRY4 1105 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TARSL2A2RTX5 802 aaKnown RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 SDR42E2A6NKP2 422 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 TRIM49D1C9J1S8 452 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 FGF10O15520 208 aaPredicted RBP5.53□□□□□ -1.52
VPS13C-209ENST00000560637 KRT38O76015 456 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 RHOBTB1O94844 696 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 PIGNO95427 931 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 APODP05090 189 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ALPIP09923 528 aa5.53□□□□□ -1.52
VPS13C-209ENST00000560637 ADH5P11766 374 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms