RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 VPS51Q9UID3 782 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 DSPP15924 2871 aaKnown RBP9.38□□□□□ -0.91
HDDC3-204ENST00000559834 SHROOM3Q8TF72 1996 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 ILVBLA1L0T0 632 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 A6NNZ2 444 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 K7ERQ8 282 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 LEFTY1O75610 366 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 CNTN5O94779 1100 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 ADCY5O95622 1261 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 CTSLP07711 333 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 PRKCSHP14314 528 aaPredicted RBP9.37□□□□□ -0.91
HDDC3-204ENST00000559834 RRM1P23921 792 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 PON1P27169 355 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 SCNN1AP37088 669 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 GGCXP38435 758 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 MTIF2P46199 727 aaKnown RBP9.37□□□□□ -0.91
HDDC3-204ENST00000559834 LSSP48449 732 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 SULT1E1P49888 294 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 NEK3P51956 506 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 UCNP55089 124 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 PCBP4P57723 403 aaKnown RBP9.37□□□□□ -0.91
HDDC3-204ENST00000559834 ERVPABLB-1P60509 514 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 TLE3Q04726 772 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 SGCGQ13326 291 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 TPD52L1Q16890 204 aaPredicted RBP9.37□□□□□ -0.91
HDDC3-204ENST00000559834 SLC25A52Q3SY17 297 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 PTPN20Q4JDL3 420 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 ALFQ53S48 1182 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 CDCP2Q5VXM1 449 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 KIAA1161Q6NSJ0 714 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 DPY19L3Q6ZPD9 716 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 ABI3BPQ7Z7G0 1075 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 ZNF605Q86T29 641 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 ERICH1Q86X53 443 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 SPACA3Q8IXA5 215 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 FAM181AQ8N9Y4 354 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 OR13H1Q8NG92 308 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 NT5C3BQ969T7 300 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 ARRDC3Q96B67 414 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 GRAMD1AQ96CP6 724 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 C18orf8Q96DM3 657 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 APOLD1Q96LR9 279 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 HAPLN3Q96S86 360 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 LGMNQ99538 433 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 HEPHQ9BQS7 1158 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 CEP44Q9C0F1 390 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 OSBPL2Q9H1P3 480 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 PIGVQ9NUD9 493 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 UCKL1Q9NWZ5 548 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 DNAJC28Q9NX36 388 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 DNAJC12Q9UKB3 198 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 CSNK1G3Q9Y6M4 447 aa9.37□□□□□ -0.91
HDDC3-204ENST00000559834 IGLV3-10A0A075B6K4 115 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 A0A0D9SEW6 157 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 CXorf51AA0A1B0GTR3 108 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 H3BM21 787 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 FOXN3O00409 490 aaPredicted RBP9.36□□□□□ -0.91
HDDC3-204ENST00000559834 SMAD6O43541 496 aaKnown RBP9.36□□□□□ -0.91
HDDC3-204ENST00000559834 SRGAP2O75044 1071 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 USP12O75317 370 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 ENDOD1O94919 500 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 PAK4O96013 591 aaPredicted RBP9.36□□□□□ -0.91
HDDC3-204ENST00000559834 CSF2P04141 144 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 PRB1P04280 392 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 L1CAMP32004 1257 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 CLCN1P35523 988 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 ETFBP38117 255 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 RABIFP47224 123 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 DNA2P51530 1060 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 CLDN2P57739 230 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 CXADRP78310 365 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 MAPK8IP2Q13387 824 aaPredicted RBP9.36□□□□□ -0.91
HDDC3-204ENST00000559834 TMEM259Q4ZIN3 620 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 CARD16Q5EG05 197 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 C22orf39Q6P5X5 142 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 LINGO4Q6UY18 593 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 SLC47A2Q86VL8 602 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 PLPP6Q8IY26 295 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 ZNF683Q8IZ20 524 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 PCDH20Q8N6Y1 951 aaKnown RBP9.36□□□□□ -0.91
HDDC3-204ENST00000559834 CHST14Q8NCH0 376 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 MSANTD4Q8NCY6 345 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 TPCN2Q8NHX9 752 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 GRIN3AQ8TCU5 1115 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 MAPK15Q8TD08 544 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 TNKS2Q9H2K2 1166 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 RETREG1Q9H6L5 497 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 POLR1BQ9H9Y6 1135 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 FZD3Q9NPG1 666 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 MPP6Q9NZW5 540 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 ZFR2Q9UPR6 939 aaKnown RBP9.36□□□□□ -0.91
HDDC3-204ENST00000559834 ASPMQ8IZT6 3477 aa9.36□□□□□ -0.91
HDDC3-204ENST00000559834 SPTY2D1-AS1A0A0U1RR47 76 aa9.35□□□□□ -0.91
HDDC3-204ENST00000559834 K7ESM1 405 aa9.35□□□□□ -0.91
HDDC3-204ENST00000559834 ERVH48-1M5A8F1 160 aa9.35□□□□□ -0.91
HDDC3-204ENST00000559834 NEMP1O14524 444 aa9.35□□□□□ -0.91
HDDC3-204ENST00000559834 FPGTO14772 594 aa9.35□□□□□ -0.91
HDDC3-204ENST00000559834 TPP1O14773 563 aa9.35□□□□□ -0.91
HDDC3-204ENST00000559834 TSPAN6O43657 245 aa9.35□□□□□ -0.91
HDDC3-204ENST00000559834 AP1G1O43747 822 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms