RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RUNDC3BQ96NL0 473 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 VAT1Q99536 393 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 CINPQ9BW66 212 aaPredicted RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 POLMQ9NP87 494 aaPredicted RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 DRG1Q9Y295 367 aaKnown RBP9.41□□□□□ -0.9
LDLR-210ENST00000559340 STON1Q9Y6Q2 735 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 ZDBF2Q9HCK1 2354 aa9.41□□□□□ -0.9
LDLR-210ENST00000559340 ESPNB1AK53 854 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 MAFKO60675 156 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 ALDH1A2O94788 518 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 KLF8O95600 359 aaPredicted RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 IGSF6O95976 241 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 RBP3P10745 1247 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 CCNB1P14635 433 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 MAPK8P45983 427 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 RHOAP61586 193 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 ARF5P84085 180 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 NSUN2Q08J23 767 aaKnown RBP eCLIP9.4□□□□□ -0.9
LDLR-210ENST00000559340 CCDC15Q0P6D6 951 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 SLC10A2Q12908 348 aaPredicted RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 KLF1Q13351 362 aaPredicted RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 LBRQ14739 615 aaKnown RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 SLC45A4Q5BKX6 768 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 RALGPS1Q5JS13 557 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 DNTTIP2Q5QJE6 756 aaKnown RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 EGFLAMQ63HQ2 1017 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 TMEM215Q68D42 235 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 NAIF1Q69YI7 327 aaPredicted RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 DRICH1Q6PGQ1 229 aaPredicted RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 NPNTQ6UXI9 565 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 MAMSTRQ6ZN01 415 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 ZC3H18Q86VM9 953 aaKnown RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 SPEM1Q8N4L4 309 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 TXNDC5Q8NBS9 432 aaKnown RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 RPLP0P6Q8NHW5 317 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 MAML1Q92585 1016 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 LRRC45Q96CN5 670 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 RPL10LQ96L21 214 aaKnown RBP9.4□□□□□ -0.9
LDLR-210ENST00000559340 OLFM3Q96PB7 478 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 PPP1R2P1Q96PQ5 205 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 FOXQ1Q9C009 403 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 CHRDQ9H2X0 955 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 TRHDEQ9UKU6 1024 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 MMP17Q9ULZ9 603 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 ZNF148Q9UQR1 794 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 MFHAS1Q9Y4C4 1052 aa9.4□□□□□ -0.9
LDLR-210ENST00000559340 BCLAF3A2AJT9 711 aaKnown RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 SHISA7A6NL88 538 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 CCDC188H7C350 402 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 J3KR12 359 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 KRIT1O00522 736 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 ALOX15BO15296 676 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 ZNF500O60304 480 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 URI1O94763 535 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 TMCC1O94876 653 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 POP4O95707 220 aaKnown RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 GSRP00390 522 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 EPHX1P07099 455 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 SRCP12931 536 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 HOXB2P14652 356 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 PECAM1P16284 738 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 AOC1P19801 751 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 GLDCP23378 1020 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 CTSOP43234 321 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 MMP13P45452 471 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 CSNK1DP48730 415 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 CCR3P51677 355 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 DGKEP52429 567 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 PTPN5P54829 565 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 IFI35P80217 286 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 ADCY2Q08462 1091 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 ENPP2Q13822 863 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 BYSLQ13895 437 aaKnown RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 PRKD1Q15139 912 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 PTPRNQ16849 979 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 HNRNPA1L2Q32P51 320 aaKnown RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 CARD16Q5EG05 197 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 EMC10Q5UCC4 262 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 FAM46CQ5VWP2 391 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 ITPRIPL1Q6GPH6 555 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 LINGO4Q6UY18 593 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 C4orf22Q6V702 233 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 SYT13Q7L8C5 426 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 ADAT2Q7Z6V5 191 aaKnown RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 CCDC105Q8IYK2 499 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 ZNF687Q8N1G0 1237 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 RYBPQ8N488 228 aaPredicted RBP9.39□□□□□ -0.91
LDLR-210ENST00000559340 FBXL6Q8N531 539 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 CCDC33Q8N5R6 958 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 TEX26Q8N6G2 289 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 ALLCQ8N6M5 410 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 IL17RCQ8NAC3 791 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 MNS1Q8NEH6 495 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 ATL2Q8NHH9 583 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 SLC35B2Q8TB61 432 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 GRK7Q8WTQ7 553 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 COG1Q8WTW3 980 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 HTR3CQ8WXA8 447 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 SORCS1Q8WY21 1168 aa9.39□□□□□ -0.91
LDLR-210ENST00000559340 OR8D1Q8WZ84 308 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms