RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 MARC1Q5VT66 337 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 FSTL4Q6MZW2 842 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 ZNF852Q6ZMS4 543 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 SIX5Q8N196 739 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 CEP112Q8N8E3 955 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 ATP11CQ8NB49 1132 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 ATL2Q8NHH9 583 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 UCMAQ8WVF2 138 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 EZH1Q92800 747 aaPredicted RBP9.79□□□□□ -0.84
CUX1-216ENST00000558469 ZNF599Q96NL3 588 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 KRT12Q99456 494 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 CARD6Q9BX69 1037 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 CEP41Q9BYV8 373 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 L2HGDHQ9H9P8 463 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 USP29Q9HBJ7 922 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 RRAGDQ9NQL2 400 aaPredicted RBP9.79□□□□□ -0.84
CUX1-216ENST00000558469 ARHGEF3Q9NR81 526 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 SLCO3A1Q9UIG8 710 aa9.79□□□□□ -0.84
CUX1-216ENST00000558469 NDRG2Q9UN36 371 aaKnown RBP9.79□□□□□ -0.84
CUX1-216ENST00000558469 CTAGE15A4D2H0 777 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 CFAP69A5D8W1 941 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 ANTXRLA6NF34 631 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 K7ERQ8 282 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 RNF103O00237 685 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 MTSS1O43312 755 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 STK10O94804 968 aaKnown RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 TMCC1O94876 653 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 PEX11BO96011 259 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 IFNB1P01574 187 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 SRPRAP08240 638 aaKnown RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 CTAGE8P0CG41 777 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 SRCP12931 536 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 ETS1P14921 441 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 PTPN3P26045 913 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 STIP1P31948 543 aaKnown RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 NNMTP40261 264 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 MMP13P45452 471 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 FNTAP49354 379 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 SERPINH1P50454 418 aaKnown RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 RENBPP51606 427 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 NRLP54845 237 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 GDF10P55107 478 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 ST8SIA6P61647 398 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 IFI35P80217 286 aaPredicted RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 ZXDAP98168 799 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 SLC20A2Q08357 652 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 ITKQ08881 620 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 WASHC5Q12768 1159 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 ZBTB17Q13105 803 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 HNRNPDQ14103 355 aaKnown RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 ZNF235Q14590 738 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 CYTH1Q15438 398 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 PTPRNQ16849 979 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 KCTD19Q17RG1 926 aaPredicted RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 FNDC3BQ53EP0 1204 aaKnown RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 INO80DQ53TQ3 878 aaPredicted RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 C2orf27AQ580R0 203 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 TMCO4Q5TGY1 634 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 EGFLAMQ63HQ2 1017 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 CTAGE6Q86UF2 777 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 CTAGE4Q8IX94 777 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 SH2D3CQ8N5H7 860 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.78□□□□□ -0.84
CUX1-216ENST00000558469 ALLCQ8N6M5 410 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 CCDC89Q8N998 374 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 GRK7Q8WTQ7 553 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 MAML1Q92585 1016 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 FATE1Q969F0 183 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 SHDQ96IW2 340 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 MRGPRX3Q96LB0 322 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 AGAP3Q96P47 875 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 UHRF1Q96T88 793 aaPredicted RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 NT5MQ9NPB1 228 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 ZDHHC4Q9NPG8 344 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 RBM22Q9NW64 420 aaKnown RBP eCLIP9.78□□□□□ -0.84
CUX1-216ENST00000558469 PCYOX1Q9UHG3 505 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 AMACRQ9UHK6 382 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 FEZ2Q9UHY8 353 aaPredicted RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 HS3ST2Q9Y278 367 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 FCF1Q9Y324 198 aaKnown RBP9.78□□□□□ -0.84
CUX1-216ENST00000558469 TTLL3Q9Y4R7 772 aa9.78□□□□□ -0.84
CUX1-216ENST00000558469 CXorf51AA0A1B0GTR3 108 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 C5orf60A6NFR6 353 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 TTC34A8MYJ7 566 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 ZNF189O75820 626 aaPredicted RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 ACTN2P35609 894 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 STARD6P59095 220 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 RHOAP61586 193 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 DR1Q01658 176 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 ZNF234Q14588 700 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 RFTN1Q14699 578 aaPredicted RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 TRIP13Q15645 432 aaPredicted RBP9.77□□□□□ -0.85
CUX1-216ENST00000558469 DLG2Q15700 870 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 TEX44Q53QW1 395 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 ANKRD20A2Q5SQ80 823 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 ANKRD20A1Q5TYW2 823 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 ANKRD20A3Q5VUR7 823 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 PID1Q7Z2X4 250 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 PRUNE1Q86TP1 453 aa9.77□□□□□ -0.85
CUX1-216ENST00000558469 METTL3Q86U44 580 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms