RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CAPZA3Q96KX2 299 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF578Q96N58 590 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-230ENST00000557427 CDK5RAP1Q96SZ6 601 aaKnown RBP12.89□□□□□ -0.35
SHMT2-230ENST00000557427 MIS12Q9H081 205 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 EBF2Q9HAK2 575 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 ACP6Q9NPH0 428 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 MARCH2Q9P0N8 246 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 CLEC4EQ9ULY5 219 aa12.89□□□□□ -0.35
SHMT2-230ENST00000557427 PDE2AO00408 941 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-230ENST00000557427 WNT9AO14904 365 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 ERLIN1O75477 346 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 GABBR2O75899 941 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 STC2O76061 302 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 SEMA4FO95754 770 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 KLKB1P03952 638 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 SETSIPP0DME0 302 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 GZMAP12544 262 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 MCM3P25205 808 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 PAFAH1B1P43034 410 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 NOP2P46087 812 aaKnown RBP12.88□□□□□ -0.35
SHMT2-230ENST00000557427 HADHBP55084 474 aaKnown RBP12.88□□□□□ -0.35
SHMT2-230ENST00000557427 ILKQ13418 452 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 STILQ15468 1287 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 DENND1BQ6P3S1 775 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 ADAT2Q7Z6V5 191 aaKnown RBP12.88□□□□□ -0.35
SHMT2-230ENST00000557427 DENND1CQ8IV53 801 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF276Q8N554 614 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 COG1Q8WTW3 980 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 UBE2Q2Q8WVN8 375 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 KCNE4Q8WWG9 221 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 CTNNBL1Q8WYA6 563 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-230ENST00000557427 KCTD13Q8WZ19 329 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 PIWIL1Q96J94 861 aaKnown RBP12.88□□□□□ -0.35
SHMT2-230ENST00000557427 SLC6A18Q96N87 628 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 ISCUQ9H1K1 167 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 ST7Q9NRC1 585 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF446Q9NWS9 450 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 FAM53CQ9NYF3 392 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 SFMBT1Q9UHJ3 866 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 NOCTQ9UK39 431 aaKnown RBP12.88□□□□□ -0.35
SHMT2-230ENST00000557427 STRIP2Q9ULQ0 834 aa12.88□□□□□ -0.35
SHMT2-230ENST00000557427 K7ENP7 123 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 NPC1O15118 1278 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 THAP12O43422 761 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 RTN2O75298 545 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 DXOO77932 396 aaKnown RBP12.87□□□□□ -0.35
SHMT2-230ENST00000557427 MT-CO3P00414 261 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 PENKP01210 267 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-230ENST00000557427 EPHX1P07099 455 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 CKMT2P17540 419 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 CHRNB2P17787 502 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 ABCB4P21439 1286 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 C21orf59P57076 290 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 RACK1P63244 317 aaKnown RBP12.87□□□□□ -0.35
SHMT2-230ENST00000557427 CCDC181Q5TID7 509 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 FYB2Q5VWT5 728 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 CCDC70Q6NSX1 233 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 INO80CQ6PI98 192 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-230ENST00000557427 Q6ZNB5 142 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 KANSL1Q7Z3B3 1105 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 RHOT2Q8IXI1 618 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 OR2T3Q8NH03 318 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 EPS8L1Q8TE68 723 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 CLEC4CQ8WTT0 213 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF606Q8WXB4 792 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 PBKQ96KB5 322 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 ACE2Q9BYF1 805 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-230ENST00000557427 DCLK3Q9C098 648 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 LHX5Q9H2C1 402 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 ARFGAP3Q9NP61 516 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 ASCL3Q9NQ33 180 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 ELOVL2Q9NXB9 296 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 OGFRQ9NZT2 677 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 CNTN6Q9UQ52 1028 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF510Q9Y2H8 683 aa12.87□□□□□ -0.35
SHMT2-230ENST00000557427 FTCDO95954 541 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 RHOXF2BP0C7M4 288 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 GP1BBP13224 206 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 EPHA8P29322 1005 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-230ENST00000557427 GNA15P30679 374 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 CORO1AP31146 461 aaKnown RBP12.86□□□□□ -0.35
SHMT2-230ENST00000557427 GPD2P43304 727 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 DAOAP59103 153 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 CDR2Q01850 454 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 CAMK2GQ13555 558 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-230ENST00000557427 RPS6KA1Q15418 735 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 LINC00303Q3SY05 128 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 BHLHA9Q7RTU4 235 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 NOP9Q86U38 636 aaKnown RBP12.86□□□□□ -0.35
SHMT2-230ENST00000557427 SLC20A1Q8WUM9 679 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 HSFY1Q96LI6 401 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 RHOXF2Q9BQY4 288 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 FAM117AQ9C073 453 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 BTBD1Q9H0C5 482 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 CNGB3Q9NQW8 809 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 ABCC13Q9NSE7 274 aa12.86□□□□□ -0.35
SHMT2-230ENST00000557427 AGO1Q9UL18 857 aaKnown RBP12.86□□□□□ -0.35
SHMT2-230ENST00000557427 NOTCH2Q04721 2471 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 SPTAN1Q13813 2472 aaKnown RBP12.85□□□□□ -0.35
SHMT2-230ENST00000557427 A0A1W2PPC4 97 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms