RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 RNF208Q9H0X6 261 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 NOD2Q9HC29 1040 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 EQTNQ9NQ60 294 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 C8orf4Q9NR00 106 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 ABCB10Q9NRK6 738 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 ETS1P14921 441 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 BCL2L1Q07817 233 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 GRIK4Q16099 956 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.96□□□□□ -1.29
SYNE2-216ENST00000555002 PRR23BQ6ZRT6 265 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 OFCC1Q8IZS5 231 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 OR2L3Q8NG85 312 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 MCMBPQ9BTE3 642 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 GANQ9H2C0 597 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 ATAD3AQ9NVI7 634 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 ELOVL2Q9NXB9 296 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 SIRPGQ9P1W8 387 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 RTN3O95197 1032 aaPredicted RBP6.96□□□□□ -1.29
SYNE2-216ENST00000555002 CXCL8P10145 99 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 MGAT1P26572 445 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 GNALP38405 381 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 UGT2B15P54855 530 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 MARC1Q5VT66 337 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 MB21D2Q8IYB1 491 aaPredicted RBP6.96□□□□□ -1.29
SYNE2-216ENST00000555002 MYLPFQ96A32 169 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 SMARCD1Q96GM5 515 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 C7orf25Q9BPX7 421 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 MXRA8Q9BRK3 442 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 BPIFA1Q9NP55 256 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 TCF7L2Q9NQB0 619 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 DDX18Q9NVP1 670 aaKnown RBP6.96□□□□□ -1.29
SYNE2-216ENST00000555002 DKK3Q9UBP4 350 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 GNPTGQ9UJJ9 305 aa6.96□□□□□ -1.29
SYNE2-216ENST00000555002 KPNA4O00629 521 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TRIM66O15016 1216 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 NOS1APO75052 506 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-216ENST00000555002 VDRP11473 427 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 IL1R1P14778 569 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 NOS2P35228 1153 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ABL2P42684 1182 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 PKNOX1P55347 436 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 MGAT5Q09328 741 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 HSPA14Q0VDF9 509 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 KCNMA1Q12791 1236 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ATG14Q6ZNE5 492 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 SPATA20Q8TB22 786 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TP53INP1Q96A56 240 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.96□□□□□ -1.33e-6■■■■■ 37.8
SYNE2-216ENST00000555002 INVSQ9Y283 1065 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 NDUFAF1Q9Y375 327 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 A0A096LPK6 155 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 MMP13P45452 471 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 MFSD10Q14728 455 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 PRR5LQ6MZQ0 368 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 GCNT7Q6ZNI0 430 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 NEDD1Q8NHV4 660 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 NUAK2Q9H093 628 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 MCCC2Q9HCC0 563 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 DNMT3LQ9UJW3 386 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3DA0A087WVF3 549 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3IA0A087WXS9 549 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3EA0A087X179 549 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3KA0A087X1G2 549 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3FA6NER0 549 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3LB9A6J9 549 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TSPAN1O60635 241 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 PGK1P00558 417 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3HP0C7X1 549 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 CCNA2P20248 432 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 RASA1P20936 1047 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 EPHX2P34913 555 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ABCG1P45844 678 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 PDIA5Q14554 519 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ZMYND11Q15326 602 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 OCLNQ16625 522 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ZIK1Q3SY52 487 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3GQ6DHY5 549 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3CQ6IPX1 549 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBC1D3Q8IZP1 549 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-216ENST00000555002 RNF148Q8N7C7 305 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ZNF433Q8N7K0 673 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ZNF611Q8N823 705 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 SMPDL3BQ92485 455 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 THAP2Q9H0W7 228 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ALG9Q9H6U8 611 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 GSG1L2A8MUP6 293 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 XKRYO14609 159 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 SUPT20HL2P0C7V6 817 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 MUTP22033 750 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 SWI5Q1ZZU3 235 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 C3orf67Q6ZVT6 689 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ADCY4Q8NFM4 1077 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 MYDGFQ969H8 173 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ZSWIM1Q9BR11 485 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 RGS17Q9UGC6 210 aaPredicted RBP6.96□□□□□ -1.3
SYNE2-216ENST00000555002 F8VZ95 297 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 TBL1XO60907 577 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 ULK1O75385 1050 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 F9P00740 461 aa6.96□□□□□ -1.3
SYNE2-216ENST00000555002 KLRC1P26715 233 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms