RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PLLPQ9Y342 182 aa26.77■■□□□ 1.88
CCDC88C-205ENST00000553403 EDF1O60869 148 aaKnown RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 OR1E1P30953 314 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 ELF1P32519 619 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 CRHR1P34998 444 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 FAM133BQ5BKY9 247 aaKnown RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 RNF187Q5TA31 235 aaPredicted RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 CGB2Q6NT52 195 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 POTEHQ6S545 545 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 TCEAL8Q8IYN2 117 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 IMP4Q96G21 291 aaKnown RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 MRM3Q9HC36 420 aaKnown RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 CHRAC1Q9NRG0 131 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 UXTQ9UBK9 157 aaPredicted RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 PRKAG3Q9UGI9 489 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 PHTF1Q9UMS5 762 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 ARL2BPQ9Y2Y0 163 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 CCT8L1PA6NM43 557 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 CREMQ03060 361 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 PKN3Q6P5Z2 889 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 KDELC1Q6UW63 502 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 RANBP10Q6VN20 620 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 CIR1Q86X95 450 aaPredicted RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 PSMG2Q969U7 264 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 MFSD3Q96ES6 412 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 MYEOVQ96EZ4 313 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 MRGPRX2Q96LB1 330 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 C12orf65Q9H3J6 166 aaKnown RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 KDM4CQ9H3R0 1056 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 NT5MQ9NPB1 228 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 VPS45Q9NRW7 570 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 MRPL17Q9NRX2 175 aaKnown RBP26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 SLC17A6Q9P2U8 582 aa26.76■■□□□ 1.87
CCDC88C-205ENST00000553403 ITGA2BP08514 1039 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 PLD1Q13393 1074 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 TEDDM1Q5T9Z0 273 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 CDHR3Q6ZTQ4 885 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 FAM47EQ6ZV65 393 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 NDUFAF2Q8N183 169 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 YME1L1Q96TA2 773 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 FSD1LQ9BXM9 530 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 PSAT1Q9Y617 370 aa26.75■■□□□ 1.87
CCDC88C-205ENST00000553403 PRRG1O14668 218 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 SLC6A4P31645 630 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 EPHB3P54753 998 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 CDH4P55283 916 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 SLC10A7Q0GE19 358 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 TWF1Q12792 350 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 RABGAP1LQ5R372 815 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 STXBP5Q5T5C0 1151 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 KCNMB4Q86W47 210 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 ZNF354CQ86Y25 554 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 PPHLN1Q8NEY8 458 aaKnown RBP26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 CCT6BQ92526 530 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 SPOCK2Q92563 424 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 PABPC5Q96DU9 382 aaKnown RBP26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 MANSC1Q9H8J5 431 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 ARNT2Q9HBZ2 717 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 PCMTD2Q9NV79 361 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 NSMCE4AQ9NXX6 385 aa26.74■■□□□ 1.87
CCDC88C-205ENST00000553403 PRAMEF11O60813 436 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 PMPCBO75439 489 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 STC2O76061 302 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 ACRP10323 421 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 NMBRP28336 390 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 SPRP35270 261 aaPredicted RBP26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 SERPINB4P48594 390 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 CSE1LP55060 971 aaKnown RBP26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 WNT3AP56704 352 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 LACTB2Q53H82 288 aaPredicted RBP26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 PDPK2PQ6A1A2 396 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 ZNF599Q96NL3 588 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 RBBP8Q99708 897 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 KLF16Q9BXK1 252 aaPredicted RBP26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 MAGEH1Q9H213 219 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 RXFP1Q9HBX9 757 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 IL23AQ9NPF7 189 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 C20orf96Q9NUD7 363 aaPredicted RBP26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 MYO1CO00159 1063 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 LILRB3O75022 631 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 DNAJB7Q7Z6W7 309 aaPredicted RBP26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 TRIM42Q8IWZ5 723 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 ISL2Q96A47 359 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 TADA1Q96BN2 335 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 KLHL5Q96PQ7 755 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 SLC13A1Q9BZW2 595 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 ATP13A1Q9HD20 1204 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 IL1RAPL1Q9NZN1 696 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 SSX2IPQ9Y2D8 614 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 TCAF1Q9Y4C2 921 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 PCDHB12Q9Y5F1 795 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 INSL5Q9Y5Q6 135 aa26.73■■□□□ 1.87
CCDC88C-205ENST00000553403 WDR91A4D1P6 747 aa26.72■■□□□ 1.87
CCDC88C-205ENST00000553403 ANKRD65E5RJM6 399 aa26.72■■□□□ 1.87
CCDC88C-205ENST00000553403 ACVRL1P37023 503 aa26.72■■□□□ 1.87
CCDC88C-205ENST00000553403 LIMK2P53671 638 aa26.72■■□□□ 1.87
CCDC88C-205ENST00000553403 TMCO4Q5TGY1 634 aa26.72■■□□□ 1.87
CCDC88C-205ENST00000553403 STRA8Q7Z7C7 330 aa26.72■■□□□ 1.87
CCDC88C-205ENST00000553403 DENND1CQ8IV53 801 aa26.72■■□□□ 1.87
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