RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	WDR92	Q96MX6	357 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	MED15	Q96RN5	788 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SYT17	Q9BSW7	474 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	STRA6	Q9BX79	667 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CARD11	Q9BXL7	1154 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ZNF341	Q9BYN7	854 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	LDAH	Q9H6V9	325 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SH2D4A	Q9H788	454 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SCPEP1	Q9HB40	452 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TRPV5	Q9NQA5	729 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	BEX4	Q9NWD9	120 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	KCND2	Q9NZV8	630 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SAE1	Q9UBE0	346 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ZFP69B	Q9UJL9	534 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ANAPC2	Q9UJX6	822 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ZDHHC8	Q9ULC8	765 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	GRID1	Q9ULK0	1009 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	GDA	Q9Y2T3	454 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	NOSIP	Q9Y314	301 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PTRH2	Q9Y3E5	179 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440		O00370	1275 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	POLR3G	O15318	223 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	DIAPH2	O60879	1101 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	MTRF1	O75570	445 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	VIP	P01282	170 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SLPI	P03973	132 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ALPP	P05187	535 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	FYN	P06241	537 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ALPPL2	P10696	532 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PCSK1	P29120	753 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SLC5A2	P31639	672 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	GUCY1A2	P33402	732 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	MSX2	P35548	267 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	MAGEA4	P43358	317 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SLC15A1	P46059	708 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CDK7	P50613	346 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	RAC3	P60763	192 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TRA2B	P62995	288 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	RNASEL	Q05823	741 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	MTM1	Q13496	603 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TRA2A	Q13595	282 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ANKRD20A4	Q4UJ75	823 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ANKRD20A8P	Q5CZ79	823 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	XKR9	Q5GH70	373 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ZMAT1	Q5H9K5	638 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	COLEC12	Q5KU26	742 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ANKRD20A2	Q5SQ80	823 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ANKRD20A1	Q5TYW2	823 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ANKRD20A3	Q5VUR7	823 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CST9LP1	Q5W188	147 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PLAG1	Q6DJT9	500 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PM20D1	Q6GTS8	502 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CENPP	Q6IPU0	288 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TMEM270	Q6UE05	265 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PTCHD4	Q6ZW05	846 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ERN2	Q76MJ5	926 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TAS1R1	Q7RTX1	841 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	FAM83A	Q86UY5	434 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	UNC5CL	Q8IV45	518 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	LILRA3	Q8N6C8	439 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	STPG3	Q8N7X2	389 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	WDR60	Q8WVS4	1066 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CORO2A	Q92828	525 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	FAM89A	Q96GI7	184 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	DGAT2	Q96PD7	388 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	GCOM2	Q9BZD3	368 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	MEGF9	Q9H1U4	602 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	MMRN2	Q9H8L6	949 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PLEKHA2	Q9HB19	425 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ZBTB26	Q9HCK0	441 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TLR9	Q9NR96	1032 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	GLRX2	Q9NS18	164 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	INTS13	Q9NVM9	706 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SIDT1	Q9NXL6	827 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CYP39A1	Q9NYL5	469 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SEC63	Q9UGP8	760 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PPIE	Q9UNP9	301 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ADGRF5	Q8IZF2	1346 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	FAM237B	A0A1B0GVD1	139 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	OR2W5	A6NFC9	320 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	GAGE10	A6NGK3	116 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	LRRC72	A6NJI9	287 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	GCOM1	H8Y6P7	765 aa	Predicted RBP	4.34	□□□□□ -1.71
USP44-208	ENST00000552440		J3KTA2	159 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	OVOL3	O00110	214 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	CD3EAP	O15446	510 aa	Known RBP	4.34	□□□□□ -1.71
USP44-208	ENST00000552440	SEPT4	O43236	478 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	ADCY6	O43306	1168 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	GPR32	O75388	356 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	SLITRK3	O94933	977 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	RHOXF2B	P0C7M4	288 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	TSPY4	P0CV99	314 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	TSPY10	P0CW01	314 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	PDGFRA	P16234	1089 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	PRKCH	P24723	683 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	ADCY8	P40145	1251 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	SLC11A2	P49281	568 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	CENPA	P49450	140 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	ETV1	P50549	477 aa		4.34	□□□□□ -1.71
USP44-208	ENST00000552440	BMX	P51813	675 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 131.6 ms