RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 MGME1Q9BQP7 344 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 SLC39A3Q9BRY0 314 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 ERP44Q9BS26 406 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 CPEB1Q9BZB8 566 aaKnown RBP6.49□□□□□ -1.37
VPS29-210ENST00000552130 NACAP1Q9BZK3 213 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 LDAHQ9H6V9 325 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 FSCN3Q9NQT6 498 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 TMOD2Q9NZR1 351 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 HCN3Q9P1Z3 774 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 BTBD7Q9P203 1132 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 LRIT1Q9P2V4 623 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 FBLN5Q9UBX5 448 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 BAG5Q9UL15 447 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 SUFUQ9UMX1 484 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 ADAM18Q9Y3Q7 739 aa6.49□□□□□ -1.37
VPS29-210ENST00000552130 OR2A25A4D2G3 310 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 SLC9B1P1A6NJY1 282 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 SH2D7A6NKC9 451 aaPredicted RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 KPNA7A9QM74 516 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 FAM86B1E9PN63 330 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 L7N2F9 121 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 GRM6O15303 877 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 CCNT2O60583 730 aaKnown RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 PPP1R11O60927 126 aaPredicted RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 DNAJB5O75953 348 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 SLITRK3O94933 977 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 ONECUT2O95948 504 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 HMGCRP04035 888 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 GNAI2P04899 355 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 GNAI3P08754 354 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 SRCP12931 536 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 RPA1P27694 616 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 IDUAP35475 653 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 PITPNBP48739 271 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 MFAP4P55083 255 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 CTXN1P60606 82 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 UFM1P61960 85 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 GNAI1P63096 354 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 FAM189BP81408 668 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 MXRA7P84157 204 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 PRKCZQ05513 592 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 GPS1Q13098 491 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 BOP1Q14137 746 aaKnown RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 RPS6KA1Q15418 735 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 TWISTNBQ3B726 338 aaPredicted RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 GKAP1Q5VSY0 366 aaPredicted RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 TAF3Q5VWG9 929 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 SHEQ5VZ18 495 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 HEPHL1Q6MZM0 1159 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 CDC73Q6P1J9 531 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 MAMDC4Q6UXC1 1216 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 PPP1R21Q6ZMI0 780 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 ADCK2Q7Z695 626 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 CABP7Q86V35 215 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 TAX1BP1Q86VP1 789 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 CEP57Q86XR8 500 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 PDCL2Q8N4E4 241 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 XXYLT1Q8NBI6 393 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 NETO2Q8NC67 525 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 TMEM116Q8NCL8 245 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 BCAS4Q8TDM0 211 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 PGAM5Q96HS1 289 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 PPP1R10Q96QC0 940 aaKnown RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 UHRF1Q96T88 793 aaPredicted RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 CACNG6Q9BXT2 260 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 WDR11Q9BZH6 1224 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 STMN4Q9H169 189 aaPredicted RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 BCAS3Q9H6U6 928 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 VCPKMTQ9H867 229 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 BARX1Q9HBU1 254 aaPredicted RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 UCKL1Q9NWZ5 548 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 MYOTQ9UBF9 498 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 DKK4Q9UBT3 224 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 FBXO40Q9UH90 709 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 AMACRQ9UHK6 382 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 LEF1Q9UJU2 399 aaPredicted RBP6.48□□□□□ -1.37
VPS29-210ENST00000552130 PADI1Q9ULC6 663 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 PLEKHM1Q9Y4G2 1056 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 SNX14Q9Y5W7 946 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 SNX9Q9Y5X1 595 aa6.48□□□□□ -1.37
VPS29-210ENST00000552130 GOLGA6L10A0A0M3HER8 536 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 SMIM30A4D0T7 59 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 C16orf96A6NNT2 1141 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 ANGPT2O15123 496 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 TAF5LO75529 589 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 SIX3O95343 332 aaPredicted RBP6.47□□□□□ -1.37
VPS29-210ENST00000552130 LARGE1O95461 756 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 STAMBPO95630 424 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 PENKP01210 267 aaPredicted RBP6.47□□□□□ -1.37
VPS29-210ENST00000552130 FSHBP01225 129 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 CFIP05156 583 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 ARP10275 920 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 NCF1P14598 390 aaPredicted RBP6.47□□□□□ -1.37
VPS29-210ENST00000552130 GABRB1P18505 474 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 MC5RP33032 325 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 RFC4P35249 363 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 DHPSP49366 369 aaPredicted RBP6.47□□□□□ -1.37
VPS29-210ENST00000552130 ASIC1P78348 528 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 NPY5RQ15761 445 aa6.47□□□□□ -1.37
VPS29-210ENST00000552130 SLC9B1Q4ZJI4 515 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms