RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 FAM129BQ96TA1 746 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 CEP44Q9C0F1 390 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 TNKS2Q9H2K2 1166 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 UBA2Q9UBT2 640 aaPredicted RBP16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 FARP1Q9Y4F1 1045 aaPredicted RBP16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 R4GN57 208 aa16.54■□□□□ 0.24
CHMP1A-209ENST00000550872 MIF4GDA9UHW6 222 aaKnown RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 ZSCAN12O43309 604 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 MFSD11O43934 449 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 KRT10P13645 584 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 ZFXP17010 805 aaPredicted RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 PEX5P50542 639 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 RPS14P62263 151 aaKnown RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 DYNLT1P63172 113 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 IL10RBQ08334 325 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 ELAVL3Q14576 367 aaKnown RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 INO80DQ53TQ3 878 aaPredicted RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 TFDP3Q5H9I0 405 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 KAZNQ674X7 775 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 SLC9A4Q6AI14 798 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 METTL3Q86U44 580 aaKnown RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 MMAAQ8IVH4 418 aaKnown RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 ATPAF2Q8N5M1 289 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 PCDH20Q8N6Y1 951 aaKnown RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 UBL4BQ8N7F7 174 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 OR8D1Q8WZ84 308 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 ISG20Q96AZ6 181 aaKnown RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 CCDC114Q96M63 670 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 ALS2CR12Q96Q35 445 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 RSPH9Q9H1X1 276 aaPredicted RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 FAM86C1Q9NVL1 165 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 PACSIN2Q9UNF0 486 aaPredicted RBP16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 INVSQ9Y283 1065 aa16.53■□□□□ 0.24
CHMP1A-209ENST00000550872 SDK1Q7Z5N4 2213 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 MCF2LO15068 1137 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 HRO43593 1189 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 TMCC1O94876 653 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 MAP3K6O95382 1288 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 ACADMP11310 421 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 CNR2P34972 360 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 CETN2P41208 172 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 RHOAP61586 193 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 GBE1Q04446 702 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 SRSF5Q13243 272 aaKnown RBP16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 BYSLQ13895 437 aaKnown RBP16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 TFDP2Q14188 446 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 TAZQ16635 292 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 CARD16Q5EG05 197 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 DSG4Q86SJ6 1040 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 LRRC49Q8IUZ0 686 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 PLD5Q8N7P1 536 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 OR2A12Q8NGT7 310 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 RLN3Q8WXF3 142 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 ALG3Q92685 438 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 TM6SF2Q9BZW4 377 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 PDFQ9HBH1 243 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 HEY1Q9Y5J3 304 aa16.52■□□□□ 0.24
CHMP1A-209ENST00000550872 NYNRINQ9P2P1 1898 aaKnown RBP16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 hCG_1818297A0A087WSY0 165 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 DDX3YO15523 660 aaKnown RBP16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 GFRA3O60609 400 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 MAFKO60675 156 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 CST8O60676 142 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 LILRB5O75023 590 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 ZNF217O75362 1048 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 ZNF821O75541 412 aaPredicted RBP16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 RPP40O75818 363 aaKnown RBP16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 IL1BP01584 269 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 DNTTP04053 509 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 MX2P20592 715 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 COPS2P61201 443 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 SNRPD1P62314 119 aaKnown RBP16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 ZBTB16Q05516 673 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 GALNT2Q10471 571 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 SLC10A2Q12908 348 aaPredicted RBP16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 CYTH1Q15438 398 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 DPY19L3Q6ZPD9 716 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 CEP68Q76N32 757 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 REXO1L1PQ8IX06 675 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 RYBPQ8N488 228 aaPredicted RBP16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 CHST14Q8NCH0 376 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 NSMCE1Q8WV22 266 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 UBE2Q2Q8WVN8 375 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 GAB3Q8WWW8 586 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 HEMGNQ9BXL5 484 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 ITM2CQ9NQX7 267 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 TRMT1Q9NXH9 659 aaKnown RBP16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 DTLQ9NZJ0 730 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 CYP8B1Q9UNU6 501 aa16.51■□□□□ 0.23
CHMP1A-209ENST00000550872 ALOX15BO15296 676 aa16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 GSRP00390 522 aa16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 PYGMP11217 842 aa16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 CHRNA3P32297 505 aa16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 SLC8A1P32418 973 aa16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 P2RY2P41231 377 aa16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 GARSP41250 739 aaKnown RBP16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 PSMD8P48556 350 aa16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 RFTN1Q14699 578 aaPredicted RBP16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 CST6Q15828 149 aa16.5■□□□□ 0.23
CHMP1A-209ENST00000550872 PPP2R5EQ16537 467 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms