RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 CCDC97Q96F63 343 aaPredicted RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 NT5C1BQ96P26 610 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 PPP1R9BQ96SB3 815 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 PSMB7Q99436 277 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 TRIM62Q9BVG3 475 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 ST7Q9NRC1 585 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 EVA1BQ9NVM1 165 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 DNAJC28Q9NX36 388 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 ARMCX3Q9UH62 379 aaPredicted RBP13.14□□□□□ -0.31
USP28-212ENST00000544750 SALL4Q9UJQ4 1053 aa13.14□□□□□ -0.31
USP28-212ENST00000544750 E5RJQ4 531 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 KPNA3O00505 521 aaPredicted RBP13.13□□□□□ -0.31
USP28-212ENST00000544750 RIOK3O14730 519 aaKnown RBP13.13□□□□□ -0.31
USP28-212ENST00000544750 TERTO14746 1132 aaKnown RBP13.13□□□□□ -0.31
USP28-212ENST00000544750 TCEA3O75764 348 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 GCNT1Q02742 428 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 AUHQ13825 339 aaKnown RBP13.13□□□□□ -0.31
USP28-212ENST00000544750 TAF5Q15542 800 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 CDKN3Q16667 212 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 PERM1Q5SV97 790 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 TPRG1LQ5T0D9 272 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 DENND1BQ6P3S1 775 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 CCDC81Q6ZN84 652 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 CLEC17AQ6ZS10 378 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 ERN2Q76MJ5 926 aaKnown RBP13.13□□□□□ -0.31
USP28-212ENST00000544750 EFL1Q7Z2Z2 1120 aaKnown RBP13.13□□□□□ -0.31
USP28-212ENST00000544750 ARHGEF19Q8IW93 802 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 PPM1KQ8N3J5 372 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 CHST14Q8NCH0 376 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 TPCN2Q8NHX9 752 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 KREMEN1Q96MU8 473 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 RPRD1AQ96P16 312 aaPredicted RBP13.13□□□□□ -0.31
USP28-212ENST00000544750 GSDMAQ96QA5 445 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 HDAC8Q9BY41 377 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 THAP9Q9H5L6 903 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 METTL14Q9HCE5 456 aaKnown RBP13.13□□□□□ -0.31
USP28-212ENST00000544750 IL17BQ9UHF5 180 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 SLC12A6Q9UHW9 1150 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 VPS28Q9UK41 221 aa13.13□□□□□ -0.31
USP28-212ENST00000544750 FLNCQ14315 2725 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 TRIM49BA6NDI0 452 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 K7ERQ8 282 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 TPP1O14773 563 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 RAD51BO15315 384 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 SPINT1O43278 529 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 SMAD6O43541 496 aaKnown RBP13.12□□□□□ -0.31
USP28-212ENST00000544750 BNIP3LO60238 219 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 SNAP91O60641 907 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 CLDN11O75508 207 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 ZNF821O75541 412 aaPredicted RBP13.12□□□□□ -0.31
USP28-212ENST00000544750 SLC2A3P11169 496 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 CCR1P32246 355 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 UBE2HP62256 183 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 CCDC15Q0P6D6 951 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 ZNF658Q5TYW1 1059 aaPredicted RBP13.12□□□□□ -0.31
USP28-212ENST00000544750 RBM44Q6ZP01 1051 aaKnown RBP13.12□□□□□ -0.31
USP28-212ENST00000544750 RRAGAQ7L523 313 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 PTAR1Q7Z6K3 402 aaPredicted RBP13.12□□□□□ -0.31
USP28-212ENST00000544750 C14orf80Q86SX3 495 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 PARGQ86W56 976 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 WDR36Q8NI36 951 aaKnown RBP13.12□□□□□ -0.31
USP28-212ENST00000544750 CCDC34Q96HJ3 373 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 SLC2A13Q96QE2 648 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 KLF6Q99612 283 aaPredicted RBP13.12□□□□□ -0.31
USP28-212ENST00000544750 BOCQ9BWV1 1114 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 SLC17A9Q9BYT1 436 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 NCKIPSDQ9NZQ3 722 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 VANGL2Q9ULK5 521 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 HS3ST4Q9Y661 456 aa13.12□□□□□ -0.31
USP28-212ENST00000544750 CPED1A4D0V7 1026 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 AQP9O43315 295 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 CNTN5O94779 1100 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 PCDH8O95206 1070 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 PAK4O96013 591 aaPredicted RBP13.11□□□□□ -0.31
USP28-212ENST00000544750 PRNPP04156 253 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 ITGB6P18564 788 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 BMP6P22004 513 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 RRM1P23921 792 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 CDH4P55283 916 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 EIF2B5Q13144 721 aaKnown RBP13.11□□□□□ -0.31
USP28-212ENST00000544750 DRAP1Q14919 205 aaPredicted RBP13.11□□□□□ -0.31
USP28-212ENST00000544750 ARTNQ5T4W7 220 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 CRTC1Q6UUV9 634 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 PRICKLE2Q7Z3G6 844 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 ZNF683Q8IZ20 524 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 DEFB106AQ8N104 65 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 ARL14Q8N4G2 192 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 SMARCE1Q969G3 411 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 MED15Q96RN5 788 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 CCNL2Q96S94 520 aaPredicted RBP13.11□□□□□ -0.31
USP28-212ENST00000544750 STARD5Q9NSY2 213 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 RMND1Q9NWS8 449 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 DDIT4Q9NX09 232 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 VPS51Q9UID3 782 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 MAN1B1Q9UKM7 699 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 ATXN7L1Q9ULK2 861 aaPredicted RBP13.11□□□□□ -0.31
USP28-212ENST00000544750 PNMA8BQ9ULN7 279 aaPredicted RBP13.11□□□□□ -0.31
USP28-212ENST00000544750 FARP1Q9Y4F1 1045 aaPredicted RBP13.11□□□□□ -0.31
USP28-212ENST00000544750 WASF2Q9Y6W5 498 aa13.11□□□□□ -0.31
USP28-212ENST00000544750 NBPF19A0A087WUL8 3843 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms