RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 MAGEA2P43356 314 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 UGT2B15P54855 530 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 CYP20A1Q6UW02 462 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 GATAD2AQ86YP4 633 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 MCFD2Q8NI22 146 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 PIK3R3Q92569 461 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 ZNF607Q96SK3 696 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 MED28Q9H204 178 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 ABT1Q9ULW3 272 aaKnown RBP19.6■□□□□ 0.73
HDAC4-215ENST00000543185 FGF10O15520 208 aaPredicted RBP19.6■□□□□ 0.73
HDAC4-215ENST00000543185 OR56A5P0C7T3 313 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 PRKAR2AP13861 404 aaKnown RBP19.6■□□□□ 0.73
HDAC4-215ENST00000543185 ZNF37AP17032 561 aaPredicted RBP19.6■□□□□ 0.73
HDAC4-215ENST00000543185 CBX5P45973 191 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 RPL21P46778 160 aaKnown RBP19.6■□□□□ 0.73
HDAC4-215ENST00000543185 BIKQ13323 160 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 POU6F1Q14863 301 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 CLHC1Q8NHS4 586 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 TEX47Q8TBZ9 253 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 EHD1Q9H4M9 534 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 HPSEQ9Y251 543 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 PCDHB7Q9Y5E2 793 aa19.6■□□□□ 0.73
HDAC4-215ENST00000543185 G3V2T6 193 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 CCR1P32246 355 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 UPB1Q9UBR1 384 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 MAGEL2Q9UJ55 1249 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 PCDHA11Q9Y5I1 949 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 C2CD2LO14523 706 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 ARMC8Q8IUR7 673 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 POU5F2Q8N7G0 328 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 WDR27A2RRH5 827 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 EFR3AQ14156 821 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 TEFMQ96QE5 360 aaKnown RBP19.59■□□□□ 0.73
HDAC4-215ENST00000543185 NDNQ99608 321 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 CPVLQ9H3G5 476 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 PARNO95453 639 aaKnown RBP19.59■□□□□ 0.73
HDAC4-215ENST00000543185 NR2F6P10588 404 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 ERCC2P18074 760 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 MARC1Q5VT66 337 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 NELL1Q92832 810 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 KCNN2Q9H2S1 579 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 TRIT1Q9H3H1 467 aaKnown RBP19.59■□□□□ 0.73
HDAC4-215ENST00000543185 COX4I1P13073 169 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 TCEA2Q15560 299 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 ZNF621Q6ZSS3 439 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 NKX2-3Q8TAU0 364 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 RFTN2Q52LD8 501 aaPredicted RBP19.59■□□□□ 0.73
HDAC4-215ENST00000543185 CRTC3Q6UUV7 619 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 ABRAQ8N0Z2 381 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 HM13Q8TCT9 377 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 PHF21BQ96EK2 531 aa19.59■□□□□ 0.73
HDAC4-215ENST00000543185 SNAP23O00161 211 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 CCNT2O60583 730 aaKnown RBP19.58■□□□□ 0.73
HDAC4-215ENST00000543185 EFCAB12Q6NXP0 572 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 SLCO6A1Q86UG4 719 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 SENP6Q9GZR1 1112 aaPredicted RBP19.58■□□□□ 0.73
HDAC4-215ENST00000543185 POMKQ9H5K3 350 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 KRT36O76013 467 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 NPTXRO95502 500 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 RPA3P35244 121 aaPredicted RBP19.58■□□□□ 0.73
HDAC4-215ENST00000543185 RFX3P48380 749 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 AKIRIN2Q53H80 203 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 PYHIN1Q6K0P9 492 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 PPP3R2Q96LZ3 170 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 PAEPP09466 180 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 TRIM40Q6P9F5 258 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 TMC7Q7Z402 723 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 PIH1D2Q8WWB5 315 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 BARX2Q9UMQ3 279 aaPredicted RBP19.58■□□□□ 0.73
HDAC4-215ENST00000543185 TELO2Q9Y4R8 837 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 A0A087WZ62 844 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 TRIM38O00635 465 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 SERPINB7O75635 380 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 SLC12A4Q9UP95 1085 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 LYVE1Q9Y5Y7 322 aa19.58■□□□□ 0.73
HDAC4-215ENST00000543185 HOXA2O43364 376 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 TRMUO75648 421 aaKnown RBP19.58■□□□□ 0.72
HDAC4-215ENST00000543185 GPR1P46091 355 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 LYPLAL1Q5VWZ2 237 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 PIGBQ92521 554 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 FBXO32Q969P5 355 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 SMURF2Q9HAU4 748 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 NT5MQ9NPB1 228 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 RRM1P23921 792 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 RRP1BQ14684 758 aaKnown RBP19.58■□□□□ 0.72
HDAC4-215ENST00000543185 CWF19L1Q69YN2 538 aaKnown RBP19.58■□□□□ 0.72
HDAC4-215ENST00000543185 TXNDC11Q6PKC3 985 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 VPS4AQ9UN37 437 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 SAMD4AQ9UPU9 718 aaKnown RBP19.58■□□□□ 0.72
HDAC4-215ENST00000543185 KBTBD13C9JR72 458 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 NR4A1P22736 598 aa19.58■□□□□ 0.72
HDAC4-215ENST00000543185 CYP11B2P19099 503 aa19.57■□□□□ 0.72
HDAC4-215ENST00000543185 EIF2S3P41091 472 aaKnown RBP19.57■□□□□ 0.72
HDAC4-215ENST00000543185 CSPG5O95196 566 aa19.57■□□□□ 0.72
HDAC4-215ENST00000543185 LYNP07948 512 aa19.57■□□□□ 0.72
HDAC4-215ENST00000543185 ALDH7A1P49419 539 aaKnown RBP19.57■□□□□ 0.72
HDAC4-215ENST00000543185 PERM1Q5SV97 790 aa19.57■□□□□ 0.72
HDAC4-215ENST00000543185 LIPMQ5VYY2 423 aa19.57■□□□□ 0.72
HDAC4-215ENST00000543185 CITED4Q96RK1 184 aa19.57■□□□□ 0.72
HDAC4-215ENST00000543185 MAGEE1Q9HCI5 957 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms