RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 MRGPRX2Q96LB1 330 aa14□□□□□ -0.17
RTN3-210ENST00000540798 ZNF778Q96MU6 729 aa14□□□□□ -0.17
RTN3-210ENST00000540798 CRISPLD1Q9H336 500 aa14□□□□□ -0.17
RTN3-210ENST00000540798 ATP13A1Q9HD20 1204 aa14□□□□□ -0.17
RTN3-210ENST00000540798 ENTPD7Q9NQZ7 604 aa14□□□□□ -0.17
RTN3-210ENST00000540798 COPG2Q9UBF2 871 aa14□□□□□ -0.17
RTN3-210ENST00000540798 DRGXA6NNA5 263 aa14□□□□□ -0.17
RTN3-210ENST00000540798 SKAP2O75563 359 aaPredicted RBP14□□□□□ -0.17
RTN3-210ENST00000540798 WFS1O76024 890 aa14□□□□□ -0.17
RTN3-210ENST00000540798 HAUS5O94927 633 aa14□□□□□ -0.17
RTN3-210ENST00000540798 YWHAQP27348 245 aa14□□□□□ -0.17
RTN3-210ENST00000540798 PTPN4P29074 926 aa14□□□□□ -0.17
RTN3-210ENST00000540798 MPP3Q13368 585 aa14□□□□□ -0.17
RTN3-210ENST00000540798 BFSP2Q13515 415 aa14□□□□□ -0.17
RTN3-210ENST00000540798 ANO4Q32M45 955 aa14□□□□□ -0.17
RTN3-210ENST00000540798 POTEHQ6S545 545 aa14□□□□□ -0.17
RTN3-210ENST00000540798 KDELC1Q6UW63 502 aa14□□□□□ -0.17
RTN3-210ENST00000540798 CMC1Q7Z7K0 106 aa14□□□□□ -0.17
RTN3-210ENST00000540798 CRLF3Q8IUI8 442 aa14□□□□□ -0.17
RTN3-210ENST00000540798 SPPL2BQ8TCT7 592 aa14□□□□□ -0.17
RTN3-210ENST00000540798 GPR22Q99680 433 aa14□□□□□ -0.17
RTN3-210ENST00000540798 TMEM175Q9BSA9 504 aa14□□□□□ -0.17
RTN3-210ENST00000540798 ZYG11BQ9C0D3 744 aa14□□□□□ -0.17
RTN3-210ENST00000540798 FBXO6Q9NRD1 293 aaPredicted RBP14□□□□□ -0.17
RTN3-210ENST00000540798 IPO11Q9UI26 975 aaKnown RBP14□□□□□ -0.17
RTN3-210ENST00000540798 BPTFQ12830 3046 aa14□□□□□ -0.17
RTN3-210ENST00000540798 SCN5AQ14524 2016 aa14□□□□□ -0.17
RTN3-210ENST00000540798 PITPNM1O00562 1244 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 EFEMP2O95967 443 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ARCN1P48444 511 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 GATMP50440 423 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 RPL10AP62906 217 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 ACBD5Q5T8D3 534 aaPredicted RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 PRR11Q96HE9 360 aaPredicted RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 BTN2A3PQ96KV6 586 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 OXCT2Q9BYC2 517 aaPredicted RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 ARNT2Q9HBZ2 717 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 RBM22Q9NW64 420 aaKnown RBP eCLIP13.99□□□□□ -0.17
RTN3-210ENST00000540798 C2orf71A6NGG8 1288 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 SERPINE1P05121 402 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 HAPLN1P10915 354 aaPredicted RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 HNRNPDQ14103 355 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 SMAD1Q15797 465 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 RASIP1Q5U651 963 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 FUT10Q6P4F1 479 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ATG14Q6ZNE5 492 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ARID3BQ8IVW6 561 aaPredicted RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 PLD6Q8N2A8 252 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 TEX26Q8N6G2 289 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ATP6V0D2Q8N8Y2 350 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 TET1Q8NFU7 2136 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 GIMAP7Q8NHV1 300 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 C2orf15Q8WU43 125 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 TADA1Q96BN2 335 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 B3GALT6Q96L58 329 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 FICDQ9BVA6 458 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 CD248Q9HCU0 757 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 IARS2Q9NSE4 1012 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 TREX1Q9NSU2 369 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ARL8BQ9NVJ2 186 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 TCAF1Q9Y4C2 921 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 CAPN14A8MX76 684 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ALDH2P05091 517 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 GRK2P25098 689 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ARNTP27540 789 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ZCCHC23Q6ZST2 131 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ZC3HC1Q86WB0 502 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 CEP57Q86XR8 500 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 ABI1Q8IZP0 508 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 FBXO32Q969P5 355 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 MIEF2Q96C03 454 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 VPS39Q96JC1 886 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 TBC1D10AQ9BXI6 508 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 SLC25A51Q9H1U9 297 aa13.99□□□□□ -0.17
RTN3-210ENST00000540798 TLR8Q9NR97 1041 aaKnown RBP13.99□□□□□ -0.17
RTN3-210ENST00000540798 A8MUI8 341 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 ITM2AO43736 263 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 DNAJB1P25685 340 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 HARS2P49590 506 aaKnown RBP13.98□□□□□ -0.17
RTN3-210ENST00000540798 RING1Q06587 406 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 EFEMP1Q12805 493 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 ALFQ53S48 1182 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 RTP2Q5QGT7 225 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 RNF19BQ6ZMZ0 732 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 NPAS4Q8IUM7 802 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 C10orf107Q8IVU9 208 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 ACVR1CQ8NER5 493 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 IPMKQ8NFU5 416 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 IMP4Q96G21 291 aaKnown RBP13.98□□□□□ -0.17
RTN3-210ENST00000540798 SORT1Q99523 831 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 WWP1Q9H0M0 922 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 RHOJQ9H4E5 214 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 STN1Q9H668 368 aaKnown RBP13.98□□□□□ -0.17
RTN3-210ENST00000540798 FCHO1O14526 889 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 SOAT2O75908 522 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 ALOX15P16050 662 aaPredicted RBP13.98□□□□□ -0.17
RTN3-210ENST00000540798 KCNA4P22459 653 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 GABRB3P28472 473 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 SLC1A6P48664 564 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 POLD2P49005 469 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms