RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 IGSF5Q9NSI5 407 aa12.86□□□□□ -0.35
CLSTN3-208ENST00000538933 TRMT1Q9NXH9 659 aaKnown RBP12.86□□□□□ -0.35
CLSTN3-208ENST00000538933 CTTNBP2NLQ9P2B4 639 aa12.86□□□□□ -0.35
CLSTN3-208ENST00000538933 CYTH4Q9UIA0 394 aa12.86□□□□□ -0.35
CLSTN3-208ENST00000538933 ZKSCAN5Q9Y2L8 839 aa12.86□□□□□ -0.35
CLSTN3-208ENST00000538933 ANKRD17O75179 2603 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 LRBAP50851 2863 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 KIF26BQ2KJY2 2108 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 A0A1W2PQH9 124 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 K7ENP7 123 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 YKT6O15498 198 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 RARGP13631 454 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 RRM1P23921 792 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 CD38P28907 300 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 CHKAP35790 457 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 LSSP48449 732 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 SKOR1P84550 965 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 IFI16Q16666 785 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 INO80CQ6PI98 192 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 FAM183BPQ6ZVS7 135 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 KIAA0907Q7Z7F0 614 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 SCD5Q86SK9 330 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 TMEM110Q86TL2 294 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 RHOT2Q8IXI1 618 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 KCNE4Q8WWG9 221 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 ULBP1Q9BZM6 244 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 ERVMER34-1Q9H9K5 563 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 LZTFL1Q9NQ48 299 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 CNGB3Q9NQW8 809 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 GDF3Q9NR23 364 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 PARVAQ9NVD7 372 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 SERGEFQ9UGK8 458 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 AGO1Q9UL18 857 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 NENFQ9UMX5 172 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 ZNF510Q9Y2H8 683 aa12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 REXO2Q9Y3B8 237 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 TDRD6O60522 2096 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-208ENST00000538933 MACROD2A1Z1Q3 448 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 ZBED1O96006 694 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 DNTTP04053 509 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 GABRB2P47870 512 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 ARRB1P49407 418 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 NXPH1P58417 271 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 RNASE9P60153 205 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 E2F1Q01094 437 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 EFHC1Q5JVL4 640 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 C10orf120Q5SQS8 335 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 USP30Q70CQ3 517 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 ADIPOR2Q86V24 386 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 SPATS2Q86XZ4 545 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 XYLT1Q86Y38 959 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 FAM217AQ8IXS0 508 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 LSMEM2Q8N112 164 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 CPXM2Q8N436 756 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 C3orf20Q8ND61 904 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 CYB5D2Q8WUJ1 264 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 TRIM62Q9BVG3 475 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 NUP85Q9BW27 656 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 FBRSQ9HAH7 460 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 METTL5Q9NRN9 209 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 UVRAGQ9P2Y5 699 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 TJP2Q9UDY2 1190 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 GUCA1BQ9UMX6 200 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 TFR2Q9UP52 801 aa12.84□□□□□ -0.35
CLSTN3-208ENST00000538933 NBASA2RRP1 2371 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 TLR4O00206 839 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 TRIM38O00635 465 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 PJA2O43164 708 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 KRT3P12035 628 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 HLA-FP30511 346 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 GABREP78334 506 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 SLC6A3Q01959 620 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 PTP4A2Q12974 167 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 FNDC3BQ53EP0 1204 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 RAB41Q5JT25 222 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 NCEH1Q6PIU2 408 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 CCAR2Q8N163 923 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 ARHGAP18Q8N392 663 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 ZNF564Q8TBZ8 553 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 SKA1Q96BD8 255 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 ARHGEF26Q96DR7 871 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 MCEEQ96PE7 176 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 RSPH9Q9H1X1 276 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 PABPC3Q9H361 631 aaKnown RBP12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 MTG2Q9H4K7 406 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 POLR1BQ9H9Y6 1135 aa12.83□□□□□ -0.36
CLSTN3-208ENST00000538933 A0A0A6YYK5 440 aaPredicted RBP12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 A0A1W2PNU3 283 aaPredicted RBP12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 TMEM110-MUSTN1A8MSY1 372 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 BUB1O43683 1085 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 SIGLEC6O43699 453 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 HSF2BPO75031 334 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 USP12O75317 370 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 GRAP2O75791 330 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 CYP1A2P05177 515 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 HOXD9P28356 352 aaPredicted RBP12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 CORO1AP31146 461 aaKnown RBP12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 RPL34P49207 117 aaKnown RBP12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 GSCP56915 257 aaPredicted RBP12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 DAOAP59103 153 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms