RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FNIP1Q8TF40 1166 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 TRIM11Q96F44 468 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 CCDC114Q96M63 670 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 PEBP4Q96S96 227 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 EPAS1Q99814 870 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.1■□□□□ 0.01
USP28-204ENST00000537642 CEP44Q9C0F1 390 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 TSPY26PQ9H489 355 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 MYO1AQ9UBC5 1043 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 FCF1Q9Y324 198 aaKnown RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 LUC7L2Q9Y383 392 aaKnown RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 FARP1Q9Y4F1 1045 aaPredicted RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 SCINQ9Y6U3 715 aa15.1■□□□□ 0.01
USP28-204ENST00000537642 TP53BP1Q12888 1972 aaPredicted RBP15.1■□□□□ 0.01
USP28-204ENST00000537642 CXorf51AA0A1B0GTR3 108 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 WASH4PA8MWX3 477 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 UPK3BL1B0FP48 263 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 UPK3BL2E5RIL1 263 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 PLRG1O43660 514 aaKnown RBP15.09■□□□□ 0.01
USP28-204ENST00000537642 CD59P13987 128 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 CASP14P31944 242 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 GRIA4P48058 902 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 PPP2CBP62714 309 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 PPP2CAP67775 309 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 POLD3Q15054 466 aaPredicted RBP15.09■□□□□ 0.01
USP28-204ENST00000537642 CA9Q16790 459 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 LAYNQ6UX15 382 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 CYP4V2Q6ZWL3 525 aaPredicted RBP15.09■□□□□ 0.01
USP28-204ENST00000537642 PCDH20Q8N6Y1 951 aaKnown RBP15.09■□□□□ 0.01
USP28-204ENST00000537642 TMIEQ8NEW7 156 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 ARRDC3Q96B67 414 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 SLC6A18Q96N87 628 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 SNRNP25Q9BV90 132 aaKnown RBP15.09■□□□□ 0.01
USP28-204ENST00000537642 IL21RQ9HBE5 538 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 IL36AQ9UHA7 158 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 PCSK1NQ9UHG2 260 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 AP4E1Q9UPM8 1137 aa15.09■□□□□ 0.01
USP28-204ENST00000537642 TBC1D3DA0A087WVF3 549 aa15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3IA0A087WXS9 549 aa15.08■□□□□ 0
USP28-204ENST00000537642 A0A087X0T9 212 aa15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3EA0A087X179 549 aa15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3KA0A087X1G2 549 aa15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3FA6NER0 549 aaPredicted RBP15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3LB9A6J9 549 aa15.08■□□□□ 0
USP28-204ENST00000537642 KPNA3O00505 521 aaPredicted RBP15.08■□□□□ 0
USP28-204ENST00000537642 KDELR3O43731 214 aa15.08■□□□□ 0
USP28-204ENST00000537642 PRNPP04156 253 aa15.08■□□□□ 0
USP28-204ENST00000537642 TPM3P06753 285 aa15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3HP0C7X1 549 aa15.08■□□□□ 0
USP28-204ENST00000537642 FAM228BP0C875 321 aa15.08■□□□□ 0
USP28-204ENST00000537642 CEACAM1P13688 526 aa15.08■□□□□ 0
USP28-204ENST00000537642 MIPP30301 263 aa15.08■□□□□ 0
USP28-204ENST00000537642 RECQLP46063 649 aaPredicted RBP15.08■□□□□ 0
USP28-204ENST00000537642 TAS2R38P59533 333 aa15.08■□□□□ 0
USP28-204ENST00000537642 RACK1P63244 317 aaKnown RBP15.08■□□□□ 0
USP28-204ENST00000537642 TEAD4Q15561 434 aa15.08■□□□□ 0
USP28-204ENST00000537642 KIF19Q2TAC6 998 aa15.08■□□□□ 0
USP28-204ENST00000537642 CARD16Q5EG05 197 aa15.08■□□□□ 0
USP28-204ENST00000537642 ARSIQ5FYB1 569 aa15.08■□□□□ 0
USP28-204ENST00000537642 ERMARDQ5T6L9 678 aa15.08■□□□□ 0
USP28-204ENST00000537642 PIP5KL1Q5T9C9 394 aa15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3GQ6DHY5 549 aa15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3CQ6IPX1 549 aa15.08■□□□□ 0
USP28-204ENST00000537642 LEKR1Q6ZMV7 388 aa15.08■□□□□ 0
USP28-204ENST00000537642 VPS36Q86VN1 386 aa15.08■□□□□ 0
USP28-204ENST00000537642 TBC1D3Q8IZP1 549 aaPredicted RBP15.08■□□□□ 0
USP28-204ENST00000537642 GRIN3AQ8TCU5 1115 aa15.08■□□□□ 0
USP28-204ENST00000537642 ISG20Q96AZ6 181 aaKnown RBP15.08■□□□□ 0
USP28-204ENST00000537642 KLC2Q9H0B6 622 aa15.08■□□□□ 0
USP28-204ENST00000537642 KDM4CQ9H3R0 1056 aa15.08■□□□□ 0
USP28-204ENST00000537642 DHX35Q9H5Z1 703 aaKnown RBP15.08■□□□□ 0
USP28-204ENST00000537642 GAREM1Q9H706 876 aa15.08■□□□□ 0
USP28-204ENST00000537642 CATSPERBQ9H7T0 1116 aa15.08■□□□□ 0
USP28-204ENST00000537642 MRPL47Q9HD33 250 aaKnown RBP15.08■□□□□ 0
USP28-204ENST00000537642 ARHGAP20Q9P2F6 1191 aa15.08■□□□□ 0
USP28-204ENST00000537642 HPCAL4Q9UM19 191 aa15.08■□□□□ 0
USP28-204ENST00000537642 ANKRD6Q9Y2G4 727 aa15.08■□□□□ 0
USP28-204ENST00000537642 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.08■□□□□ 0
USP28-204ENST00000537642 SNX11Q9Y5W9 270 aa15.08■□□□□ 0
USP28-204ENST00000537642 WASF2Q9Y6W5 498 aa15.08■□□□□ 0
USP28-204ENST00000537642 WNT9AO14904 365 aa15.07■□□□□ 0
USP28-204ENST00000537642 FGF10O15520 208 aaPredicted RBP15.07■□□□□ 0
USP28-204ENST00000537642 LATO43561 262 aa15.07■□□□□ 0
USP28-204ENST00000537642 LRCH4O75427 683 aa15.07■□□□□ 0
USP28-204ENST00000537642 LEFTY1O75610 366 aa15.07■□□□□ 0
USP28-204ENST00000537642 RNF8O76064 485 aa15.07■□□□□ 0
USP28-204ENST00000537642 CER1O95813 267 aa15.07■□□□□ 0
USP28-204ENST00000537642 HNRNPH3P31942 346 aaKnown RBP15.07■□□□□ 0
USP28-204ENST00000537642 HTR7P34969 479 aa15.07■□□□□ 0
USP28-204ENST00000537642 DNA2P51530 1060 aa15.07■□□□□ 0
USP28-204ENST00000537642 CCNHP51946 323 aaPredicted RBP15.07■□□□□ 0
USP28-204ENST00000537642 GEMIN4P57678 1058 aaKnown RBP15.07■□□□□ 0
USP28-204ENST00000537642 TPI1P60174 286 aa15.07■□□□□ 0
USP28-204ENST00000537642 SLC14A1Q13336 389 aa15.07■□□□□ 0
USP28-204ENST00000537642 NFKBIBQ15653 356 aa15.07■□□□□ 0
USP28-204ENST00000537642 HLA-BQ31612 363 aa15.07■□□□□ 0
USP28-204ENST00000537642 KCNT1Q5JUK3 1230 aa15.07■□□□□ 0
USP28-204ENST00000537642 IL27RAQ6UWB1 636 aa15.07■□□□□ 0
USP28-204ENST00000537642 UMODL1-AS1Q8N2C9 162 aa15.07■□□□□ 0
USP28-204ENST00000537642 RNF214Q8ND24 703 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms