RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 KLHDC7BQ96G42 594 aa13.41□□□□□ -0.26
RTN3-207ENST00000536011 PCMTD1Q96MG8 357 aaPredicted RBP13.41□□□□□ -0.26
RTN3-207ENST00000536011 HDAC8Q9BY41 377 aa13.41□□□□□ -0.26
RTN3-207ENST00000536011 DKK4Q9UBT3 224 aa13.41□□□□□ -0.26
RTN3-207ENST00000536011 HPCAL4Q9UM19 191 aa13.41□□□□□ -0.26
RTN3-207ENST00000536011 SNX10Q9Y5X0 201 aa13.41□□□□□ -0.26
RTN3-207ENST00000536011 PTPRBP23467 1997 aa13.41□□□□□ -0.26
RTN3-207ENST00000536011 ITPR1Q14643 2758 aa13.41□□□□□ -0.26
RTN3-207ENST00000536011 A0A1W2PQU0 124 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 ANKRD62A6NC57 917 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 K7ERQ8 282 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 WNT9AO14904 365 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 ENDOD1O94919 500 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 CAPNS1P04632 268 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 CYP1A1P04798 512 aaPredicted RBP13.4□□□□□ -0.26
RTN3-207ENST00000536011 CTSLP07711 333 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 DESP17661 470 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 HNRNPA2B1P22626 353 aaKnown RBP13.4□□□□□ -0.26
RTN3-207ENST00000536011 PTPN9P43378 593 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 MAPKAPK2P49137 400 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 NEK3P51956 506 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 JAM2P57087 298 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 NRG1Q02297 640 aaPredicted RBP13.4□□□□□ -0.26
RTN3-207ENST00000536011 GNA12Q03113 381 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 SHBQ15464 509 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 CDO1Q16878 200 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 C2CD6Q53TS8 623 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 PRAMEF14Q5SWL7 426 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 SFMBT2Q5VUG0 894 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 SASS6Q6UVJ0 657 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 DHRS13Q6UX07 377 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 ERN2Q76MJ5 926 aaKnown RBP13.4□□□□□ -0.26
RTN3-207ENST00000536011 STRADAQ7RTN6 431 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 HORMAD1Q86X24 394 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 DRC7Q8IY82 874 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 EID2Q8N6I1 236 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 PDCD7Q8N8D1 485 aaKnown RBP13.4□□□□□ -0.26
RTN3-207ENST00000536011 NEK11Q8NG66 645 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 OR7D4Q8NG98 312 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 GRIN3AQ8TCU5 1115 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 SLC20A1Q8WUM9 679 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 TNKS2Q9H2K2 1166 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 LMBRD1Q9NUN5 540 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 ANO10Q9NW15 660 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 OR12D3Q9UGF7 316 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 LHX6Q9UPM6 363 aa13.4□□□□□ -0.26
RTN3-207ENST00000536011 NBEAQ8NFP9 2946 aa13.4□□□□□ -0.27
RTN3-207ENST00000536011 SMAD6O43541 496 aaKnown RBP13.39□□□□□ -0.27
RTN3-207ENST00000536011 PCDH8O95206 1070 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 CALB1P05937 261 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 RHOQP17081 205 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 ITGB7P26010 798 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 ADRA1BP35368 520 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 DNA2P51530 1060 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 TAS2R38P59533 333 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 FMO1Q01740 532 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 MYL5Q02045 173 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 POLD3Q15054 466 aaPredicted RBP13.39□□□□□ -0.27
RTN3-207ENST00000536011 STX1AQ16623 288 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 ARSIQ5FYB1 569 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 KIAA1161Q6NSJ0 714 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 TRNP1Q6NT89 227 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 RWDD4Q6NW29 188 aaKnown RBP13.39□□□□□ -0.27
RTN3-207ENST00000536011 FBXL19Q6PCT2 694 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 DPY19L3Q6ZPD9 716 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 SPATS2Q86XZ4 545 aaKnown RBP13.39□□□□□ -0.27
RTN3-207ENST00000536011 EMC1Q8N766 993 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 TMEM145Q8NBT3 493 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 RXFP2Q8WXD0 754 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 ISG20Q96AZ6 181 aaKnown RBP13.39□□□□□ -0.27
RTN3-207ENST00000536011 RNF25Q96BH1 459 aaPredicted RBP13.39□□□□□ -0.27
RTN3-207ENST00000536011 NXPE2Q96DL1 559 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 LRIG1Q96JA1 1093 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 HEPHQ9BQS7 1158 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 C11orf70Q9BRQ4 267 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 OSBPL2Q9H1P3 480 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 NLRC4Q9NPP4 1024 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 TMPRSS4Q9NRS4 437 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 ACACAQ13085 2346 aa13.39□□□□□ -0.27
RTN3-207ENST00000536011 DOCK4Q8N1I0 1966 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 FAM170AA1A519 330 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 ZSCAN5CA6NGD5 496 aaPredicted RBP13.38□□□□□ -0.27
RTN3-207ENST00000536011 C2CD4BA6NLJ0 364 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 LGALS16A8MUM7 142 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 SLC31A1O15431 190 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 RAMP2O60895 175 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 LEFTY1O75610 366 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 ZMPSTE24O75844 475 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 CCDC172P0C7W6 258 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 THEGLP0DJG4 465 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 ALPPL2P10696 532 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 KRT3P12035 628 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 PRLRP16471 622 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 GLDCP23378 1020 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 ACADVLP49748 655 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 CCNHP51946 323 aaPredicted RBP13.38□□□□□ -0.27
RTN3-207ENST00000536011 GSCP56915 257 aaPredicted RBP13.38□□□□□ -0.27
RTN3-207ENST00000536011 RPS21P63220 83 aaKnown RBP13.38□□□□□ -0.27
RTN3-207ENST00000536011 ZNF284Q2VY69 593 aa13.38□□□□□ -0.27
RTN3-207ENST00000536011 CARD16Q5EG05 197 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms