RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 TSC22D3Q99576 134 aa16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 AP5M1Q9H0R1 490 aa16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 ZNF408Q9H9D4 720 aa16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 FAM105AQ9NUU6 356 aa16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 CACNG4Q9UBN1 327 aa16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 VTI1BQ9UEU0 232 aa16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 RUVBL2Q9Y230 463 aaKnown RBP16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 Q9Y3F1 56 aa16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 SNX10Q9Y5X0 201 aa16.29■□□□□ 0.2
CHMP1A-202ENST00000535997 ANXA9O76027 345 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 SORBS2O94875 1100 aaKnown RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 SBK3P0C264 359 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 ITGA7Q13683 1181 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 ARL13AQ5H913 290 aaPredicted RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 MORN1Q5T089 497 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 CTU1Q7Z7A3 348 aaKnown RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 RP9Q8TA86 221 aaKnown RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 STYXQ8WUJ0 223 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 LENG1Q96BZ8 264 aaPredicted RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 CELF6Q96J87 481 aaKnown RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 CCDC28BQ9BUN5 200 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 KLHL4Q9C0H6 718 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 SLC24A3Q9HC58 644 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 ACOT9Q9Y305 439 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 CCDC189A1A4V9 331 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 TK2O00142 265 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 CHRNGP07510 517 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 SLC35E2BP0CK96 405 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 GABRB3P28472 473 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 MAP2K5Q13163 448 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 RNF220Q5VTB9 566 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 BEND5Q7L4P6 421 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 CCDC117Q8IWD4 279 aaPredicted RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 CPSF7Q8N684 471 aaKnown RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 TRAPPC9Q96Q05 1148 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 FCRL5Q96RD9 977 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 PTPN18Q99952 460 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 TRIM62Q9BVG3 475 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 ADAMTS6Q9UKP5 1117 aa16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 PRPF19Q9UMS4 504 aaKnown RBP16.28■□□□□ 0.2
CHMP1A-202ENST00000535997 TARM1B6A8C7 271 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 ZMPSTE24O75844 475 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 PIGNO95427 931 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 AFF1P51825 1210 aaKnown RBP16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 NAGLUP54802 743 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 BEX3Q00994 111 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 LSM12Q3MHD2 195 aaKnown RBP16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 TCHHL1Q5QJ38 904 aaPredicted RBP16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 POTEHQ6S545 545 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 SETD3Q86TU7 594 aaPredicted RBP16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 TAC4Q86UU9 113 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 KYQ8NBH2 561 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 C3orf58Q8NDZ4 430 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 AGR3Q8TD06 166 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 PDCD6IPQ8WUM4 868 aaKnown RBP16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 PPP1R2P1Q96PQ5 205 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 SERPINI1Q99574 410 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 TBL1YQ9BQ87 522 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 ACBD6Q9BR61 282 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 FAM192AQ9GZU8 254 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 WDR55Q9H6Y2 383 aaPredicted RBP16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 CHST12Q9NRB3 414 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 MIOSQ9NXC5 875 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 STK39Q9UEW8 545 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 ST3GAL5Q9UNP4 418 aa16.27■□□□□ 0.2
CHMP1A-202ENST00000535997 M0QZ92 97 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 AHCYL1O43865 530 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 SAT1P21673 171 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 MPSTP25325 297 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 PIK3R1P27986 724 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 SERPINB5P36952 375 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 EIF4EBP2Q13542 120 aaPredicted RBP16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 PEX6Q13608 980 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 MAP3K21Q5TCX8 1036 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 RWDD4Q6NW29 188 aaKnown RBP16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 FAM171BQ6P995 826 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 C16orf89Q6UX73 402 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 ACAD11Q709F0 780 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 TMC7Q7Z402 723 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 FSTL5Q8N475 847 aaPredicted RBP16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 LZTR1Q8N653 840 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 SPATA22Q8NHS9 363 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 PTCD2Q8WV60 388 aaKnown RBP16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 SCYL1Q96KG9 808 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 HAPLN3Q96S86 360 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 FLRT1Q9NZU1 646 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 GIT1Q9Y2X7 761 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 DOCK3Q8IZD9 2030 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 GOLGA8QA0A0J9YX86 632 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 GOLGA8OA6NCC3 632 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 ARL5CA6NH57 179 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 GOLGA8NF8WBI6 632 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 CASQ2O14958 399 aaPredicted RBP16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 PHGDHO43175 533 aaKnown RBP16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 GRID2O43424 1007 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 PEX1O43933 1283 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 SNUPNO95149 360 aaKnown RBP16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 UBTFL6P0CB48 400 aaPredicted RBP16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 HTR7P34969 479 aa16.26■□□□□ 0.19
CHMP1A-202ENST00000535997 RAB10P61026 200 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms