RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CLEC9AQ6UXN8 241 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 UNC13DQ70J99 1090 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 ZDHHC17Q8IUH5 632 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 SAMD14Q8IZD0 417 aaPredicted RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 SDR16C5Q8N3Y7 309 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 NKAPQ8N5F7 415 aaKnown RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 ANKRD42Q8N9B4 389 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 FAM71DQ8N9W8 422 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 MYRIPQ8NFW9 859 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 PARK7Q99497 189 aaKnown RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 HERPUD2Q9BSE4 406 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 FOXP1Q9H334 677 aaPredicted RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 USP29Q9HBJ7 922 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 FZD4Q9ULV1 537 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 LRCH1Q9Y2L9 728 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 SLC27A6Q9Y2P4 619 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 PCDHGB2Q9Y5G2 931 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 PRRC2BQ5JSZ5 2229 aaKnown RBP4.38□□□□□ -1.71
CD44-235ENST00000532339 A0A0G2JMZ2 1700 aa4.38□□□□□ -1.71
CD44-235ENST00000532339 A0A087WV62 115 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 APOL1O14791 398 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 RNMTO43148 476 aaKnown RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 OAZ2O95190 189 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 IL9P15248 144 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 TKTP29401 623 aaKnown RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 NTSR1P30989 418 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 GPC5P78333 572 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 EIF4A2Q14240 407 aaKnown RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 FAM110CQ1W6H9 321 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 SLC35G1Q2M3R5 365 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 LEXMQ3ZCV2 418 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 HERC4Q5GLZ8 1057 aaPredicted RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 SLC10A5Q5PT55 438 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 PIP4P1Q86T03 277 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 ERO1BQ86YB8 467 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 ARFGAP1Q8N6T3 406 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 TBC1D16Q8TBP0 767 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 KAZALD1Q96I82 304 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 ZBED3Q96IU2 234 aaPredicted RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 CINPQ9BW66 212 aaPredicted RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 POT1Q9NUX5 634 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 LUZP4Q9P127 313 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 ZNF212Q9UDV6 495 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 VPS51Q9UID3 782 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 CAPN11Q9UMQ6 739 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 HPSEQ9Y251 543 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 MORC2Q9Y6X9 1032 aaPredicted RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 MYO3BQ8WXR4 1341 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 SPEGQ15772 3267 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 SMG1Q96Q15 3661 aaKnown RBP4.37□□□□□ -1.71
CD44-235ENST00000532339 TECTAO75443 2155 aa4.37□□□□□ -1.71
CD44-235ENST00000532339 ANKRD17O75179 2603 aaKnown RBP4.36□□□□□ -1.71
CD44-235ENST00000532339 LRRC37AA6NMS7 1700 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 TMEM221A6NGB7 291 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 M0R296 226 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 DNM1LO00429 736 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 NTSR2O95665 410 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 TMEM225BP0DP42 221 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 HARSP12081 509 aaKnown RBP4.36□□□□□ -1.71
CD44-235ENST00000532339 ME1P48163 572 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 HSPA7P48741 367 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 COPAP53621 1224 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 LINC00205P59089 165 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 YPEL5P62699 121 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 CCDC15Q0P6D6 951 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 PPIL2Q13356 520 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 KCNAB1Q14722 419 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 MPEG1Q2M385 716 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 HSP90AB4PQ58FF6 505 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 MANEALQ5VSG8 457 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 SUSD4Q5VX71 490 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 ZNF790Q6PG37 636 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 CCDC174Q6PII3 467 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 PIM3Q86V86 326 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 TMEM41AQ96HV5 264 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 ZFYVE19Q96K21 471 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 SNX22Q96L94 193 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 TRMOQ9BU70 441 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 TTLL2Q9BWV7 592 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 ADGRE3Q9BY15 652 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 MYO1AQ9UBC5 1043 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 HEY2Q9UBP5 337 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 HS3ST3B1Q9Y662 390 aa4.36□□□□□ -1.71
CD44-235ENST00000532339 RPAP1Q9BWH6 1393 aaPredicted RBP4.36□□□□□ -1.71
CD44-235ENST00000532339 MGAMO43451 1857 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 CD8B2A6NJW9 211 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 ERVV-1B6SEH8 477 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 INPPL1O15357 1258 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 USP12O75317 370 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 KRT38O76015 456 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 MT-ND5P03915 603 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 CD63P08962 238 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 FGFR2P21802 821 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 AVPR2P30518 371 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 TECP42680 631 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 PIP4K2AP48426 406 aaPredicted RBP4.35□□□□□ -1.71
CD44-235ENST00000532339 JAK3P52333 1124 aa4.35□□□□□ -1.71
CD44-235ENST00000532339 STIM1Q13586 685 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms