RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 ATP13A1Q9HD20 1204 aa10.67□□□□□ -0.7
PRPF40B-204ENST00000527253 SEPT11Q9NVA2 429 aaKnown RBP10.67□□□□□ -0.7
PRPF40B-204ENST00000527253 TOR4AQ9NXH8 423 aa10.67□□□□□ -0.7
PRPF40B-204ENST00000527253 CA5BQ9Y2D0 317 aa10.67□□□□□ -0.7
PRPF40B-204ENST00000527253 FCF1Q9Y324 198 aaKnown RBP10.67□□□□□ -0.7
PRPF40B-204ENST00000527253 WASF2Q9Y6W5 498 aa10.67□□□□□ -0.7
PRPF40B-204ENST00000527253 A0A1B0GTQ1 180 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 FAM221BA6H8Z2 402 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 LRRC53A6NM62 1247 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 C1QTNF3-AMACRE9PGA6 284 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 PROS1P07225 676 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 ATXN1LP0C7T5 689 aaKnown RBP10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 FERP16591 822 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 RHOQP17081 205 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 CD38P28907 300 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 SERPINH1P50454 418 aaKnown RBP10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 CLCN6P51797 869 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 SCAPQ12770 1279 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 ARL13BQ3SXY8 428 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 ARSIQ5FYB1 569 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 RWDD4Q6NW29 188 aaKnown RBP10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 LRSAM1Q6UWE0 723 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 UNQ6494/PRO21346Q6UXR6 183 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 LEKR1Q6ZMV7 388 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 GLRX5Q86SX6 157 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 SPATS2Q86XZ4 545 aaKnown RBP10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 RHBDD1Q8TEB9 315 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 ARHGEF2Q92974 986 aaKnown RBP10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 NTAN1Q96AB6 310 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 SERAC1Q96JX3 654 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 KLC2Q9H0B6 622 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 CAAP1Q9H8G2 361 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 AASDHPPTQ9NRN7 309 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 TMEM248Q9NWD8 314 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 DNAI1Q9UI46 699 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 NEUROG3Q9Y4Z2 214 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 PCDHB9Q9Y5E1 797 aa10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 ARID1BQ8NFD5 2236 aaPredicted RBP10.66□□□□□ -0.7
PRPF40B-204ENST00000527253 A0A1B0GTH6 734 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 TLR4O00206 839 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 KPNA3O00505 521 aaPredicted RBP10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 FLRT2O43155 660 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 PCDHGA12O60330 932 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 RNGTTO60942 597 aaKnown RBP10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 LEFTY1O75610 366 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 DKK1O94907 266 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 TNFAIP3P21580 790 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 GKP32189 559 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 MAPKAPK2P49137 400 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 ZNF165P49910 485 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 CCT8P50990 548 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 ZNF143P52747 638 aaPredicted RBP10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 C21orf59P57076 290 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 NXPH1P58417 271 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 SLC20A2Q08357 652 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 CARD16Q5EG05 197 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 NAPEPLDQ6IQ20 393 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 RETSATQ6NUM9 610 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 DNAJC24Q6P3W2 148 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 ZNF571Q7Z3V5 609 aaPredicted RBP10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 ADAT2Q7Z6V5 191 aaKnown RBP10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 SLFN11Q7Z7L1 901 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 TRIM69Q86WT6 500 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 GATAD2AQ86YP4 633 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 ARFGAP1Q8N6T3 406 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 NETO2Q8NC67 525 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 GRIN3AQ8TCU5 1115 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 ADAMTS14Q8WXS8 1223 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 KLK6Q92876 244 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 TBC1D31Q96DN5 1066 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 MCEEQ96PE7 176 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 ELF4Q99607 663 aaPredicted RBP10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 CEP44Q9C0F1 390 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 NAT10Q9H0A0 1025 aaKnown RBP10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 KDM4CQ9H3R0 1056 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 IL36AQ9UHA7 158 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 FZD10Q9ULW2 581 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 MSRB2Q9Y3D2 182 aa10.65□□□□□ -0.7
PRPF40B-204ENST00000527253 TP53BP1Q12888 1972 aaPredicted RBP10.65□□□□□ -0.71
PRPF40B-204ENST00000527253 PLXNB3Q9ULL4 1909 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 GOLGA4Q13439 2230 aaKnown RBP10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 A0A1W2PQU0 124 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 SMTNL1A8MU46 457 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 TMCO5BA8MYB1 307 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 DDX3XO00571 662 aaKnown RBP eCLIP10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 ATMINO43313 823 aaPredicted RBP10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 PRNPP04156 253 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 SKILP12757 684 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 PRLRP16471 622 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 L1CAMP32004 1257 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 DNA2P51530 1060 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 BNIP3Q12983 259 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 MAMLD1Q13495 774 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 NR1I3Q14994 352 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 SUZ12Q15022 739 aaKnown RBP10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 ZNF284Q2VY69 593 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 SCYL2Q6P3W7 929 aa10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 ERN2Q76MJ5 926 aaKnown RBP10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 PRPF39Q86UA1 669 aaKnown RBP10.64□□□□□ -0.71
PRPF40B-204ENST00000527253 MARCH9Q86YJ5 346 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms