RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 CHPFQ8IZ52 775 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.97□□□□□ -0.17
CD44-224ENST00000526669 PRELID2Q8N945 189 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 IL17RCQ8NAC3 791 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 KIF18AQ8NI77 898 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 NSMCE1Q8WV22 266 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 EXOC2Q96KP1 924 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 NAP1L3Q99457 506 aaPredicted RBP13.97□□□□□ -0.17
CD44-224ENST00000526669 COL25A1Q9BXS0 654 aaPredicted RBP13.97□□□□□ -0.17
CD44-224ENST00000526669 TM6SF2Q9BZW4 377 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 EPHX3Q9H6B9 360 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 NT5MQ9NPB1 228 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 PLA2G4CQ9UP65 541 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 STARD13Q9Y3M8 1113 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 TTLL3Q9Y4R7 772 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 STON1Q9Y6Q2 735 aa13.97□□□□□ -0.17
CD44-224ENST00000526669 TTC24A2A3L6 582 aaPredicted RBP13.96□□□□□ -0.17
CD44-224ENST00000526669 HACD1B0YJ81 288 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 F5H423 210 aaPredicted RBP13.96□□□□□ -0.17
CD44-224ENST00000526669 SGK1O00141 431 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 KRIT1O00522 736 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 MATN3O15232 486 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 NCAM2O15394 837 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 LIASO43766 372 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 NEBLO76041 1014 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 PEX11BO96011 259 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 JCHAINP01591 159 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 EPHX1P07099 455 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 HNRNPLP14866 589 aaKnown RBP eCLIP13.96□□□□□ -0.17
CD44-224ENST00000526669 NNMTP40261 264 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 PAFAH1B1P43034 410 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 KCNJ1P48048 391 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 MAXP61244 160 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 MRPS21P82921 87 aaKnown RBP13.96□□□□□ -0.17
CD44-224ENST00000526669 XRCC4Q13426 336 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 ZNF235Q14590 738 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 FBXO43Q4G163 708 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 SLC45A4Q5BKX6 768 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 ATXN7L2Q5T6C5 722 aaPredicted RBP13.96□□□□□ -0.17
CD44-224ENST00000526669 TIGD7Q6NT04 549 aaPredicted RBP13.96□□□□□ -0.17
CD44-224ENST00000526669 Q6ZVU0 165 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 LRRC49Q8IUZ0 686 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 TSEN2Q8NCE0 465 aaKnown RBP13.96□□□□□ -0.17
CD44-224ENST00000526669 SLC35B2Q8TB61 432 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 ZNF419Q96HQ0 510 aaPredicted RBP13.96□□□□□ -0.17
CD44-224ENST00000526669 TSGA13Q96PP4 275 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 TMEM121Q9BTD3 319 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 CINPQ9BW66 212 aaPredicted RBP13.96□□□□□ -0.17
CD44-224ENST00000526669 LHX3Q9UBR4 397 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 CDC23Q9UJX2 597 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 HS3ST2Q9Y278 367 aa13.96□□□□□ -0.17
CD44-224ENST00000526669 TRPM6Q9BX84 2022 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 CUL9Q8IWT3 2517 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 FAM86C2PA6NEL3 165 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 TNFRSF10AO00220 468 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 MUSKO15146 869 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 KCNN4O15554 427 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 PI15O43692 258 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 ATP9BO43861 1147 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 ADAM23O75077 832 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 GJB3O75712 270 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 SLC34A2O95436 690 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 HLA-DQB2P05538 268 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 CCNB1P14635 433 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 COL9A1P20849 921 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 PTPN3P26045 913 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 NTSR1P30989 418 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 MMP13P45452 471 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 RGRP47804 291 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 GDF10P55107 478 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 GEMIN4P57678 1058 aaKnown RBP13.95□□□□□ -0.18
CD44-224ENST00000526669 RHOAP61586 193 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 BYSLQ13895 437 aaKnown RBP13.95□□□□□ -0.18
CD44-224ENST00000526669 GAS6Q14393 721 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 OASLQ15646 514 aaKnown RBP13.95□□□□□ -0.18
CD44-224ENST00000526669 HEATR6Q6AI08 1181 aaKnown RBP13.95□□□□□ -0.18
CD44-224ENST00000526669 PRUNE1Q86TP1 453 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 CACUL1Q86Y37 369 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 PGBD5Q8N414 524 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 RYBPQ8N488 228 aaPredicted RBP13.95□□□□□ -0.18
CD44-224ENST00000526669 OR6K2Q8NGY2 324 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 FRS2Q8WU20 508 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 HTR3CQ8WXA8 447 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 MAML1Q92585 1016 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 MAGOHBQ96A72 148 aaKnown RBP13.95□□□□□ -0.18
CD44-224ENST00000526669 CCDC114Q96M63 670 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 ZNF599Q96NL3 588 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 NELL2Q99435 816 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 TMEM245Q9H330 911 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 RBM22Q9NW64 420 aaKnown RBP eCLIP13.95□□□□□ -0.18
CD44-224ENST00000526669 C2orf42Q9NWW7 574 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 ZNF148Q9UQR1 794 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 SIT1Q9Y3P8 196 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 PLXND1Q9Y4D7 1925 aa13.95□□□□□ -0.18
CD44-224ENST00000526669 THADAQ6YHU6 1953 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 MUC3AQ02505 3323 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 GOLGA6L10A0A0M3HER8 536 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 BCLAF3A2AJT9 711 aaKnown RBP13.94□□□□□ -0.18
CD44-224ENST00000526669 RNF103O00237 685 aa13.94□□□□□ -0.18
CD44-224ENST00000526669 INSIG1O15503 277 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms