RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 LTBQ06643 244 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 AP5B1Q2VPB7 878 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 MOGAT3Q86VF5 341 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 WDR5BQ86VZ2 330 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 GALNT15Q8N3T1 639 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 IQCF1Q8N6M8 205 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 RBMXL3Q8N7X1 1067 aaKnown RBP4.31□□□□□ -1.72
CD44-217ENST00000525348 NEXN-AS1Q8NBZ9 246 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 BICD2Q8TD16 824 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 RUBCNQ92622 972 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 LTV1Q96GA3 475 aaPredicted RBP4.31□□□□□ -1.72
CD44-217ENST00000525348 POLR3GLQ9BT43 218 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 CTDSP1Q9GZU7 261 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 CXorf56Q9H5V9 222 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 SAYSD1Q9NPB0 183 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 PLK2Q9NYY3 685 aa4.31□□□□□ -1.72
CD44-217ENST00000525348 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.3□□□□□ -1.72
CD44-217ENST00000525348 OR6C75A6NL08 312 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 STX16-NPEPL1H3BU86 382 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 STX16O14662 325 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 METTL18O95568 372 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 LDHAP00338 332 aaKnown RBP4.3□□□□□ -1.72
CD44-217ENST00000525348 TK1P04183 234 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 CD72P21854 359 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 GNLYP22749 145 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 PCYT1AP49585 367 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 ENTPD1P49961 510 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 CLCNKBP51801 687 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 ARHGAP8P85298 464 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 BYSLQ13895 437 aaKnown RBP4.3□□□□□ -1.72
CD44-217ENST00000525348 PRKG1Q13976 671 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 TAF5Q15542 800 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 RUNDC3AQ59EK9 446 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 SH2D4BQ5SQS7 431 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 FNBP1LQ5T0N5 605 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 HEPHL1Q6MZM0 1159 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 AADACL2Q6P093 401 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 RBM23Q86U06 439 aaKnown RBP4.3□□□□□ -1.72
CD44-217ENST00000525348 SERPINA11Q86U17 422 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 SPATA2LQ8IUW3 424 aaPredicted RBP4.3□□□□□ -1.72
CD44-217ENST00000525348 AFG1LQ8WV93 481 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 CTAGE1Q96RT6 745 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 RPS6KC1Q96S38 1066 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 ARPC5LQ9BPX5 153 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 NTPCRQ9BSD7 190 aaKnown RBP4.3□□□□□ -1.72
CD44-217ENST00000525348 IFT27Q9BW83 186 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 CATSPERBQ9H7T0 1116 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 NLKQ9UBE8 527 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 FEM1BQ9UK73 627 aa4.3□□□□□ -1.72
CD44-217ENST00000525348 NAP1L2Q9ULW6 460 aaPredicted RBP4.3□□□□□ -1.72
CD44-217ENST00000525348 TMEM247A6NEH6 219 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 RNMTO43148 476 aaKnown RBP4.29□□□□□ -1.72
CD44-217ENST00000525348 SEPT4O43236 478 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 LIASO43766 372 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 CCNT1O60563 726 aaKnown RBP4.29□□□□□ -1.72
CD44-217ENST00000525348 DPP6P42658 865 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 MCM2P49736 904 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 CRYZQ08257 329 aaKnown RBP4.29□□□□□ -1.72
CD44-217ENST00000525348 IL13RA2Q14627 380 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 FBXO43Q4G163 708 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 DNTTIP2Q5QJE6 756 aaKnown RBP4.29□□□□□ -1.72
CD44-217ENST00000525348 OTUD1Q5VV17 481 aaPredicted RBP4.29□□□□□ -1.72
CD44-217ENST00000525348 ZNF324BQ6AW86 544 aaPredicted RBP4.29□□□□□ -1.72
CD44-217ENST00000525348 SETD9Q8NE22 299 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 ELP5Q8TE02 316 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 SDCCAG3Q96C92 435 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 PHF21BQ96EK2 531 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 RNFT2Q96EX2 444 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 MASTLQ96GX5 879 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 TEFMQ96QE5 360 aaKnown RBP4.29□□□□□ -1.72
CD44-217ENST00000525348 HIF1ANQ9NWT6 349 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 KIF17Q9P2E2 1029 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 SEL1LQ9UBV2 794 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 FZD10Q9ULW2 581 aa4.29□□□□□ -1.72
CD44-217ENST00000525348 CCDC180Q9P1Z9 1646 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 MS4A18H0YCH9 400 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 NBNO60934 754 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 HOXC6P09630 235 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 HOXD3P31249 432 aaPredicted RBP4.28□□□□□ -1.72
CD44-217ENST00000525348 GJC1P36383 396 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 AARSP49588 968 aaKnown RBP eCLIP4.28□□□□□ -1.72
CD44-217ENST00000525348 PDLIM4P50479 330 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 CDH12P55289 794 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 EGR4Q05215 589 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 RPE65Q16518 533 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 TMEM268Q5VZI3 342 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 NAPEPLDQ6IQ20 393 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.28□□□□□ -1.72
CD44-217ENST00000525348 ADHFE1Q8IWW8 467 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 NUDCD2Q8WVJ2 157 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 SECISBP2LQ93073 1101 aaKnown RBP4.28□□□□□ -1.72
CD44-217ENST00000525348 RBM17Q96I25 401 aaKnown RBP4.28□□□□□ -1.72
CD44-217ENST00000525348 FAM167BQ9BTA0 163 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 PAGR1Q9BTK6 254 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 LHPPQ9H008 270 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 GRHL1Q9NZI5 618 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 PROCRQ9UNN8 238 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 DNAJC16Q9Y2G8 782 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 DERAQ9Y315 318 aa4.28□□□□□ -1.72
CD44-217ENST00000525348 hCG_1642624A0A1W2PR95 340 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms