RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 AMFRQ9UKV5 643 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 PCDHA3Q9Y5H8 950 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 GON4LQ3T8J9 2241 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 RIF1Q5UIP0 2472 aaKnown RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 ABCA7Q8IZY2 2146 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 ZNF821O75541 412 aaPredicted RBP14.53□□□□□ -0.08
NUP54-216ENST00000514901 RHOBTB1O94844 696 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 ADH1BP00325 375 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 GSRP00390 522 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 IGLV3-19P01714 112 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 VAV1P15498 845 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 MX2P20592 715 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 C5AR1P21730 350 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 CTNNA2P26232 953 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 CTNNA1P35221 906 aaKnown RBP14.53□□□□□ -0.08
NUP54-216ENST00000514901 COPS2P61201 443 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 SNRPD1P62314 119 aaKnown RBP14.53□□□□□ -0.08
NUP54-216ENST00000514901 CCDC15Q0P6D6 951 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 TFDP2Q14188 446 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 CST6Q15828 149 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 TAZQ16635 292 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 CARD16Q5EG05 197 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 SPDYCQ5MJ68 293 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 Q6ZVU0 165 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 USP30Q70CQ3 517 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 PEX26Q7Z412 305 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 MMAAQ8IVH4 418 aaKnown RBP14.53□□□□□ -0.08
NUP54-216ENST00000514901 PQLC3Q8N755 202 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 TMIEQ8NEW7 156 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 OR2A12Q8NGT7 310 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 EXD1Q8NHP7 514 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 NKD2Q969F2 451 aaPredicted RBP14.53□□□□□ -0.08
NUP54-216ENST00000514901 RNF25Q96BH1 459 aaPredicted RBP14.53□□□□□ -0.08
NUP54-216ENST00000514901 ERLEC1Q96DZ1 483 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 RBM41Q96IZ5 413 aaKnown RBP14.53□□□□□ -0.08
NUP54-216ENST00000514901 ZC3H10Q96K80 434 aaKnown RBP14.53□□□□□ -0.08
NUP54-216ENST00000514901 SLC6A17Q9H1V8 727 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 SP110Q9HB58 689 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 TRIM10Q9UDY6 481 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 PPM1HQ9ULR3 514 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 GUCA1BQ9UMX6 200 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 NCKAP1Q9Y2A7 1128 aa14.53□□□□□ -0.08
NUP54-216ENST00000514901 MIF4GDA9UHW6 222 aaKnown RBP14.52□□□□□ -0.09
NUP54-216ENST00000514901 C1QTNF3-AMACRE9PGA6 284 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 J3KR12 359 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 MAP3K13O43283 966 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 PALMO75781 387 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 TMCC1O94876 653 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 LMNAP02545 664 aaKnown RBP14.52□□□□□ -0.09
NUP54-216ENST00000514901 PRNPP04156 253 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 CD6P30203 668 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 CHRNA3P32297 505 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 SLC8A1P32418 973 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 CETN2P41208 172 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 DNA2P51530 1060 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 TPMTP51580 245 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 RAD51Q06609 339 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 ELF2Q15723 593 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 NCBP2-AS2Q69YL0 99 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 BZW1Q7L1Q6 419 aaKnown RBP14.52□□□□□ -0.09
NUP54-216ENST00000514901 NT5DC3Q86UY8 548 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 KBTBD6Q86V97 674 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 ATPAF2Q8N5M1 289 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 UBL4BQ8N7F7 174 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 NSMCE1Q8WV22 266 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 RLN3Q8WXF3 142 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 LRIG1Q96JA1 1093 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 LOXL4Q96JB6 756 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 ZNF830Q96NB3 372 aaPredicted RBP14.52□□□□□ -0.09
NUP54-216ENST00000514901 PABPC3Q9H361 631 aaKnown RBP14.52□□□□□ -0.09
NUP54-216ENST00000514901 PDFQ9HBH1 243 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 FCF1Q9Y324 198 aaKnown RBP14.52□□□□□ -0.09
NUP54-216ENST00000514901 MFHAS1Q9Y4C4 1052 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 PIEZO1Q92508 2521 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 GPR179Q6PRD1 2367 aa14.52□□□□□ -0.09
NUP54-216ENST00000514901 PTPRZ1P23471 2315 aaPredicted RBP14.52□□□□□ -0.09
NUP54-216ENST00000514901 ZFHX2Q9C0A1 2572 aaPredicted RBP14.51□□□□□ -0.09
NUP54-216ENST00000514901 IGHV1OR15-9A0A0B4J2B8 117 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 A0A0U1RQJ8 604 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 APOL1O14791 398 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 BNIP3LO60238 219 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 POP4O95707 220 aaKnown RBP14.51□□□□□ -0.09
NUP54-216ENST00000514901 IL1BP01584 269 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 CDKN2BP42772 138 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 NR2C2P49116 596 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 RENBPP51606 427 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 RWDD2BP57060 319 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 GALNT2Q10471 571 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 SRSF5Q13243 272 aaKnown RBP14.51□□□□□ -0.09
NUP54-216ENST00000514901 CYTH1Q15438 398 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 PPP2R5EQ16537 467 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 TFDP3Q5H9I0 405 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 SLC9A4Q6AI14 798 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 MFSD7Q6UXD7 560 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 LEKR1Q6ZMV7 388 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 SPOCD1Q6ZMY3 1216 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 DPY19L3Q6ZPD9 716 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 PRR23BQ6ZRT6 265 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 LPCAT2Q7L5N7 544 aa14.51□□□□□ -0.09
NUP54-216ENST00000514901 RFX6Q8HWS3 928 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms