RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 C6orf222P0C671 652 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 GPR89BP0CG08 455 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MLNP12872 115 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PVALBP20472 110 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 PHKA2P46019 1235 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 NUDT2P50583 147 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MAPK10P53779 464 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PKNOX1P55347 436 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RALGDSQ12967 914 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 AP3B2Q13367 1082 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 GUK1Q16774 197 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 FAM83EQ2M2I3 478 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SEL1L3Q68CR1 1132 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PTRHD1Q6GMV3 140 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 TTBK2Q6IQ55 1244 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ACAD10Q6JQN1 1059 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SLC30A10Q6XR72 485 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 LINC00299Q6ZSB3 139 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 EPHX4Q8IUS5 362 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PPIL6Q8IXY8 311 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 INO80EQ8NBZ0 244 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 OR10R2Q8NGX6 335 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RP9Q8TA86 221 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 ZNF671Q8TAW3 534 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 POC1BQ8TC44 478 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SGCDQ92629 289 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 KIAA1143Q96AT1 154 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 C3orf49Q96BT1 292 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TMA16Q96EY4 203 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 RNF145Q96MT1 663 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SRPK1Q96SB4 655 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 SLC9A7Q96T83 725 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MAP3K14Q99558 947 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 KLF6Q99612 283 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 TXN2Q99757 166 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PSD2Q9BQI7 771 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 CCDC32Q9BV29 185 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SPATA5L1Q9BVQ7 753 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 COPS7BQ9H9Q2 264 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 FANCFQ9NPI8 374 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 CALML5Q9NZT1 146 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PEAK1Q9H792 1746 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 CIB4A0PJX0 185 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 HTR3EA5X5Y0 456 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ZSCAN5CA6NGD5 496 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 SOWAHDA6NJG2 315 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 C2orf81A6NN90 581 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 CCRL2O00421 344 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TRAFD1O14545 582 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 SHOXO15266 292 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ZMYND10O75800 440 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TOX4O94842 621 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MBD4O95243 580 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SERPINE1P05121 402 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 STAG3L2P0CL84 134 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 THEGLP0DJG4 465 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 NR2F6P10588 404 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RAG1P15918 1043 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PTPN1P18031 435 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 CYP11B2P19099 503 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RFC4P35249 363 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ARL3P36405 182 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 GSTM5P46439 218 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 FGL2Q14314 439 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 POLD3Q15054 466 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 LLGL1Q15334 1064 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SKIV2LQ15477 1246 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 ZSWIM7Q19AV6 140 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 INSCQ1MX18 579 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ZIK1Q3SY52 487 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 AGAP9Q5VTM2 703 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TRIM65Q6PJ69 517 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ZNF852Q6ZMS4 543 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 WDR53Q7Z5U6 358 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 SLCO6A1Q86UG4 719 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SKA3Q8IX90 412 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 GALNT12Q8IXK2 581 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 OR8H3Q8N146 312 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 USP38Q8NB14 1042 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MCUQ8NE86 351 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 NKX2-3Q8TAU0 364 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TRPM4Q8TD43 1214 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 IFT43Q96FT9 208 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ZNF419Q96HQ0 510 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 ZNF560Q96MR9 790 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PHF12Q96QT6 1004 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 P2RX7Q99572 595 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 OCSTAMPQ9BR26 566 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MMTAG2Q9BU76 263 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 ZSCAN5AQ9BUG6 496 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RNF38Q9H0F5 515 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 HIPK3Q9H422 1215 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TCF7L1Q9HCS4 588 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SLC39A2Q9NP94 309 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SLCO1B3Q9NPD5 702 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SMYD2Q9NRG4 433 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SPANXA1Q9NS26 97 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 FAM49BQ9NUQ9 324 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RDH8Q9NYR8 311 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 STUB1Q9UNE7 303 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms