RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 NSMCE1Q8WV22 266 aa17.52■□□□□ 0.4
LIME1-208ENST00000493265 HDAC11Q96DB2 347 aa17.52■□□□□ 0.4
LIME1-208ENST00000493265 QKIQ96PU8 341 aaKnown RBP eCLIP17.52■□□□□ 0.4
LIME1-208ENST00000493265 ACOX2Q99424 681 aa17.52■□□□□ 0.4
LIME1-208ENST00000493265 CEP41Q9BYV8 373 aa17.52■□□□□ 0.4
LIME1-208ENST00000493265 LMAN1LQ9HAT1 526 aa17.52■□□□□ 0.4
LIME1-208ENST00000493265 LTB4R2Q9NPC1 389 aa17.52■□□□□ 0.4
LIME1-208ENST00000493265 DNPEPQ9ULA0 475 aa17.52■□□□□ 0.4
LIME1-208ENST00000493265 A0A0A0MRY4 1105 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 GOLGA6L10A0A0M3HER8 536 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 SMAD6O43541 496 aaKnown RBP17.51■□□□□ 0.39
LIME1-208ENST00000493265 LIASO43766 372 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 BNIP3LO60238 219 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 RNF40O75150 1001 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 NEBLO76041 1014 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 CCNCP24863 283 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 RBL1P28749 1068 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 NNMTP40261 264 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 PPIDQ08752 370 aaKnown RBP17.51■□□□□ 0.39
LIME1-208ENST00000493265 ZNF234Q14588 700 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 PTPRNQ16849 979 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 SLC45A4Q5BKX6 768 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 TIGD7Q6NT04 549 aaPredicted RBP17.51■□□□□ 0.39
LIME1-208ENST00000493265 LRRC49Q8IUZ0 686 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 CDKL3Q8IVW4 592 aaPredicted RBP17.51■□□□□ 0.39
LIME1-208ENST00000493265 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.51■□□□□ 0.39
LIME1-208ENST00000493265 PRELID2Q8N945 189 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 MTG2Q9H4K7 406 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 PDFQ9HBH1 243 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 CACNA2D2Q9NY47 1150 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 CDC23Q9UJX2 597 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 HCN2Q9UL51 889 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 ZNF148Q9UQR1 794 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 FCF1Q9Y324 198 aaKnown RBP17.51■□□□□ 0.39
LIME1-208ENST00000493265 SIT1Q9Y3P8 196 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 SHROOM3Q8TF72 1996 aa17.51■□□□□ 0.39
LIME1-208ENST00000493265 DMXL1Q9Y485 3027 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 ZSCAN5CA6NGD5 496 aaPredicted RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 TTC34A8MYJ7 566 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 HACD1B0YJ81 288 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 WASH3PC4AMC7 463 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 MATN3O15232 486 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 KCNN4O15554 427 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 TMCC1O94876 653 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 KLF8O95600 359 aaPredicted RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 JCHAINP01591 159 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 SRCP12931 536 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 HLA-EP13747 358 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 VAV1P15498 845 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 KCNJ1P48048 391 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 SERPINH1P50454 418 aaKnown RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 CLCN6P51797 869 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 GEMIN4P57678 1058 aaKnown RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 SLC10A7Q0GE19 358 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 XRCC4Q13426 336 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 BYSLQ13895 437 aaKnown RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 CCINQ13939 588 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 PRKD1Q15139 912 aaPredicted RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 CCNG2Q16589 344 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 KCTD19Q17RG1 926 aaPredicted RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 TMCO4Q5TGY1 634 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 HEATR6Q6AI08 1181 aaKnown RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 SERPINA13PQ6UXR4 307 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 KIAA2013Q8IYS2 634 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 CHPFQ8IZ52 775 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 SH2D3CQ8N5H7 860 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 ALLCQ8N6M5 410 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 MAGOHBQ96A72 148 aaKnown RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 MRGPRX3Q96LB0 322 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 CCDC114Q96M63 670 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 TSGA13Q96PP4 275 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 HINFPQ9BQA5 517 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 TMEM121Q9BTD3 319 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 CINPQ9BW66 212 aaPredicted RBP17.5■□□□□ 0.39
LIME1-208ENST00000493265 BRD8Q9H0E9 1235 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 TNKS2Q9H2K2 1166 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 DLGAP2Q9P1A6 1054 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 TTLL3Q9Y4R7 772 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 CACNA1AO00555 2505 aa17.5■□□□□ 0.39
LIME1-208ENST00000493265 CD160O95971 181 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 SRPRAP08240 638 aaKnown RBP17.49■□□□□ 0.39
LIME1-208ENST00000493265 SP9P0CG40 484 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 CHRNB1P11230 501 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 CCNB1P14635 433 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 IL12RB1P42701 662 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 KIR2DL1P43626 348 aaPredicted RBP17.49■□□□□ 0.39
LIME1-208ENST00000493265 ITKQ08881 620 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 LRRC32Q14392 662 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 ZNF235Q14590 738 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 LBRQ14739 615 aaKnown RBP17.49■□□□□ 0.39
LIME1-208ENST00000493265 CYTH1Q15438 398 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 DLG2Q15700 870 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 DGKKQ5KSL6 1271 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 MARC1Q5VT66 337 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 Q6ZS52 159 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 KLHL7Q8IXQ5 586 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 PJA1Q8NG27 643 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 RPLP0P6Q8NHW5 317 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 SLC35B2Q8TB61 432 aa17.49■□□□□ 0.39
LIME1-208ENST00000493265 HTR3CQ8WXA8 447 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms