RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 IGLV3-27P01718 113 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 PRMT2P55345 433 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 POU6F1Q14863 301 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 C10orf120Q5SQS8 335 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 CRLF3Q8IUI8 442 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 ARID3BQ8IVW6 561 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 CCDC117Q8IWD4 279 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 INPP5DQ92835 1189 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 SLC7A6OSQ96CW6 309 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 MRGPRX2Q96LB1 330 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 ENTPD7Q9NQZ7 604 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 THAP1Q9NVV9 213 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 TANC1Q9C0D5 1861 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 E2F8A0AVK6 867 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 H7C4K7 107 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 PMPCBO75439 489 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 SMARCB1Q12824 385 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 DUSP4Q13115 394 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 RIPK1Q13546 671 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 HSF5Q4G112 596 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 RAP1GAP2Q684P5 730 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 FATE1Q969F0 183 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 IGSF8Q969P0 613 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 FBXO6Q9NRD1 293 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 COMMD8Q9NX08 183 aa21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 HBS1LQ9Y450 684 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-208ENST00000492980 SLC12A8A0AV02 714 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 NEBLO76041 1014 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 HAUS5O94927 633 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 KCNA4P22459 653 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 MAP2K2P36507 400 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 CDK18Q07002 472 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 FBXL22Q6P050 247 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 PPHLN1Q8NEY8 458 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 PPP1R14CQ8TAE6 165 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 UTP4Q969X6 686 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 VPS39Q96JC1 886 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 TTPALQ9BTX7 342 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 UNC93B1Q9H1C4 597 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 CAB39LQ9H9S4 337 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 ZNF358Q9NW07 568 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 NSMCE4AQ9NXX6 385 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 J3KR12 359 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 MPOP05164 745 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 HMBSP08397 361 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 ZDHHC11BP0C7U3 371 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 HNRNPDQ14103 355 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 ARHGEF6Q15052 776 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 POTEHQ6S545 545 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 PRSS55Q6UWB4 352 aaPredicted RBP21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 RANBP10Q6VN20 620 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 ANKS3Q6ZW76 656 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 PLD6Q8N2A8 252 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 ACVR1CQ8NER5 493 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 C2orf15Q8WU43 125 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 PRR11Q96HE9 360 aaPredicted RBP21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 SCLYQ96I15 445 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 FSD1LQ9BXM9 530 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 SLC25A51Q9H1U9 297 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 ZNF212Q9UDV6 495 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 STK38LQ9Y2H1 464 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 TCAF1Q9Y4C2 921 aa21.43■■□□□ 1.02
CCDC88B-208ENST00000492980 A0A096LPK6 155 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 PQBP1O60828 265 aaKnown RBP21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 ZBTB16Q05516 673 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 DLG2Q15700 870 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 CCDC153Q494R4 210 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 KDELC1Q6UW63 502 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 FAM43BQ6ZT52 329 aaPredicted RBP21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 CLEC14AQ86T13 490 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 C10orf107Q8IVU9 208 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 PTCD2Q8WV60 388 aaKnown RBP21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 MRM3Q9HC36 420 aaKnown RBP21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 DONSONQ9NYP3 566 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 COPG2Q9UBF2 871 aa21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 MARCOQ9UEW3 520 aaPredicted RBP21.42■■□□□ 1.02
CCDC88B-208ENST00000492980 DRGXA6NNA5 263 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 TRAFD1O14545 582 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 RENBPP51606 427 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 CNTN4Q8IWV2 1026 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 GIPC2Q8TF65 315 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 RAB3IPQ96QF0 476 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 CCSER2Q9H7U1 834 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 NOD2Q9HC29 1040 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 LNPEPQ9UIQ6 1025 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 ITM2AO43736 263 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 KITP10721 976 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 ATF6P18850 670 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 CSRP3P50461 194 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 RASSF2P50749 326 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 WNT3AP56704 352 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 IRF9Q00978 393 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 RING1Q06587 406 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 GRM3Q14832 879 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 ESRP1Q6NXG1 681 aaKnown RBP21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 ZC3HC1Q86WB0 502 aaKnown RBP21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 IMP4Q96G21 291 aaKnown RBP21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 GPR22Q99680 433 aa21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 OXCT2Q9BYC2 517 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-208ENST00000492980 ATXN3LQ9H3M9 355 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms