RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TSPAN14Q8NG11 270 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 FAM45AQ8TCE6 357 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 NPR3P17342 541 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 EIF2B2P49770 351 aaKnown RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 CLCN5P51795 746 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 MAPK10P53779 464 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 OR5B17Q8NGF7 314 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 MCOLN3Q8TDD5 553 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 PPP1R14AQ96A00 147 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 TMEM159Q96B96 161 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 SERAC1Q96JX3 654 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 SENP8Q96LD8 212 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 TSEN34Q9BSV6 310 aaKnown RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 CAPSQ13938 189 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 ZC3H12AQ5D1E8 599 aaKnown RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 ADHFE1Q8IWW8 467 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 STK40Q8N2I9 435 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 PANX3Q96QZ0 392 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 CEP44Q9C0F1 390 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 FAM25AB3EWG3 89 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 FAM25CB3EWG5 89 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 FAM25GB3EWG6 89 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 PIAS1O75925 651 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 TRAF3Q13114 568 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 MAPK11Q15759 364 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 SHROOM1Q2M3G4 852 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 CELF3Q5SZQ8 465 aaKnown RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 AAGABQ6PD74 315 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 ABHD16BQ9H3Z7 469 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 FBXO6Q9NRD1 293 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 STK39Q9UEW8 545 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 ZMYND8Q9ULU4 1186 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 HDAC3O15379 428 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 GRIN3BO60391 1043 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 PSMA3P25788 255 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 ADORA2AP29274 412 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 GSSP48637 474 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 BOP1Q14137 746 aaKnown RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 MAGEE2Q8TD90 523 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-210ENST00000487017 STARD8Q92502 1023 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 PCDHB18PQ96TA0 734 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 TBCDQ9BTW9 1192 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 C1orf50Q9BV19 199 aa16.65■□□□□ 0.26
COL7A1-210ENST00000487017 SWT1Q5T5J6 900 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 MFSD5Q6N075 450 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 PGLYRP2Q96PD5 576 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 FAM50BQ9Y247 325 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 MRPL42Q9Y6G3 142 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 PNMA8CA0A1B0GUJ8 204 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 PDHXO00330 501 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 RTP1P59025 263 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 TOP3AQ13472 1001 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 PHKG1Q16816 387 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 SLC39A12Q504Y0 691 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 PTGR2Q8N8N7 351 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 KLHL28Q9NXS3 571 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 CPA4Q9UI42 421 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 ALDH9A1P49189 494 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 RAB10P61026 200 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 TSNQ15631 228 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 ITIH5Q86UX2 942 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 PTCD3Q96EY7 689 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 MRPL57Q9BQC6 102 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 CDT1Q9H211 546 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 HMG20AQ9NP66 347 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 AHCYL1O43865 530 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 MAGEA10P43363 369 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 NR1H2P55055 460 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 EVX2Q03828 476 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 TAF5Q15542 800 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 TLK2Q86UE8 772 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 NKAPQ8N5F7 415 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 ASZ1Q8WWH4 475 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 REPS1Q96D71 796 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 MRPL48Q96GC5 212 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 ACE2Q9BYF1 805 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 REXO4Q9GZR2 422 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 VAV3Q9UKW4 847 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 CORO1CQ9ULV4 474 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 TMCO1Q9UM00 188 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 EIF2S1P05198 315 aaKnown RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 C4BPBP20851 252 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 PSEN2P49810 448 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 LIPMQ5VYY2 423 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 ZNF605Q86T29 641 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 SYTL1Q8IYJ3 562 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 FNIP1Q8TF40 1166 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 KCTD4Q8WVF5 259 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 DGCR6LQ9BY27 220 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 FAM126AQ9BYI3 521 aaPredicted RBP16.64■□□□□ 0.25
COL7A1-210ENST00000487017 RPS6KB2Q9UBS0 482 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 PACSIN3Q9UKS6 424 aa16.64■□□□□ 0.25
COL7A1-210ENST00000487017 RPL5P46777 297 aaKnown RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 ST13P50502 369 aaKnown RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 TNK2Q07912 1038 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 FAM187BQ17R55 369 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 PIWIL4Q7Z3Z4 852 aaKnown RBP16.63■□□□□ 0.25
COL7A1-210ENST00000487017 LENG9Q96B70 501 aa16.63■□□□□ 0.25
COL7A1-210ENST00000487017 ATAD3AQ9NVI7 634 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms