RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ATL2Q8NHH9 583 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 CASKIN2Q8WXE0 1202 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 EDAQ92838 391 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 MRGPRX3Q96LB0 322 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 CCDC114Q96M63 670 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 NELL2Q99435 816 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 CINPQ9BW66 212 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 FOXQ1Q9C009 403 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 DDX47Q9H0S4 455 aaKnown RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 TBC1D17Q9HA65 648 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 USP29Q9HBJ7 922 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 LTB4R2Q9NPC1 389 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 ZDHHC4Q9NPG8 344 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 RBM12Q9NTZ6 932 aaKnown RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 RBM22Q9NW64 420 aaKnown RBP eCLIP12.46□□□□□ -0.41
SDC1-206ENST00000482879 THAP10Q9P2Z0 257 aaPredicted RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 SEPT3Q9UH03 358 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 HCN2Q9UL51 889 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 SLC8A2Q9UPR5 921 aa12.46□□□□□ -0.41
SDC1-206ENST00000482879 FCF1Q9Y324 198 aaKnown RBP12.46□□□□□ -0.41
SDC1-206ENST00000482879 FAM170BA6NMN3 283 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 TTC34A8MYJ7 566 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 SGK1O00141 431 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 NPC1O15118 1278 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 ATP9BO43861 1147 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 STK10O94804 968 aaKnown RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 CHRNB1P11230 501 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 HNRNPLP14866 589 aaKnown RBP eCLIP12.45□□□□□ -0.42
SDC1-206ENST00000482879 PTPN3P26045 913 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 TARSP26639 723 aaKnown RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 CHRNA3P32297 505 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 MMP13P45452 471 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 FNTAP49354 379 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 VASPP50552 380 aaPredicted RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 RHOAP61586 193 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 IFI35P80217 286 aaPredicted RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 MRPS21P82921 87 aaKnown RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 LMNB2Q03252 620 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 C2orf54Q08AI8 447 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 WASHC5Q12768 1159 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 ZBTB17Q13105 803 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 CCINQ13939 588 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 LRRC32Q14392 662 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 ZNF235Q14590 738 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 TEX44Q53QW1 395 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 C2orf27AQ580R0 203 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 DGKKQ5KSL6 1271 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 FAM182AQ5T1J6 154 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 TTC27Q6P3X3 843 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 CCDC137Q6PK04 289 aaKnown RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 SERPINA13PQ6UXR4 307 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 GSTA5Q7RTV2 222 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 ZNF572Q7Z3I7 529 aaPredicted RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 METTL3Q86U44 580 aaKnown RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 CCDC105Q8IYK2 499 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 TEX26Q8N6G2 289 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 KDM1BQ8NB78 822 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 MNS1Q8NEH6 495 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 CCDC26Q8TAB7 109 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 KCNV2Q8TDN2 545 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 MYO19Q96H55 970 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 ACOX2Q99424 681 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 IL12RB2Q99665 862 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 CEP41Q9BYV8 373 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 CEP44Q9C0F1 390 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 LMAN1LQ9HAT1 526 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 NT5MQ9NPB1 228 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 CACNA2D2Q9NY47 1150 aa12.45□□□□□ -0.42
SDC1-206ENST00000482879 FEZ2Q9UHY8 353 aaPredicted RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 MTF2Q9Y483 593 aaPredicted RBP12.45□□□□□ -0.42
SDC1-206ENST00000482879 BDP1A6H8Y1 2624 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 CKAP5Q14008 2032 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 MUC22E2RYF6 1773 aaPredicted RBP12.44□□□□□ -0.42
SDC1-206ENST00000482879 CTAGE15A4D2H0 777 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 WASH3PC4AMC7 463 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 RNF103O00237 685 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 RNF40O75150 1001 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 KLF8O95600 359 aaPredicted RBP12.44□□□□□ -0.42
SDC1-206ENST00000482879 IFNB1P01574 187 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 CTAGE8P0CG41 777 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 ALADP13716 330 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 HLA-EP13747 358 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 IL12RB1P42701 662 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 WASP42768 502 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 GDF10P55107 478 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 ITKQ08881 620 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 SDE2Q6IQ49 451 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 C22orf39Q6P5X5 142 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 TRIM67Q6ZTA4 783 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 PID1Q7Z2X4 250 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 CTAGE6Q86UF2 777 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 CTAGE4Q8IX94 777 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 CHPFQ8IZ52 775 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 ZNF687Q8N1G0 1237 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 ALLCQ8N6M5 410 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 CEP112Q8N8E3 955 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 TSEN2Q8NCE0 465 aaKnown RBP12.44□□□□□ -0.42
SDC1-206ENST00000482879 GRK7Q8WTQ7 553 aa12.44□□□□□ -0.42
SDC1-206ENST00000482879 ISG20Q96AZ6 181 aaKnown RBP12.44□□□□□ -0.42
SDC1-206ENST00000482879 RUNDC3BQ96NL0 473 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms