RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	PRR35	P0CG20	571 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	COX7A2	P14406	83 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	KEL	P23276	732 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	KLRC2	P26717	231 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	HOXD9	P28356	352 aa	Predicted RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	CIITA	P33076	1130 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	GGT5	P36269	586 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	ARHGAP25	P42331	645 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	GEMIN4	P57678	1058 aa	Known RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZNF91	Q05481	1191 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	FBXO43	Q4G163	708 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	ALG10	Q5BKT4	473 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	ALG10B	Q5I7T1	473 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	C10orf25	Q5T742	122 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	FAM69A	Q5T7M9	428 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	TTLL5	Q6EMB2	1281 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	SLC22A25	Q6T423	547 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	IL20RB	Q6UXL0	311 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	SRRM1	Q8IYB3	904 aa	Known RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZDHHC23	Q8IYP9	409 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	GHDC	Q8N2G8	530 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZMIZ2	Q8NF64	920 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	PIGO	Q8TEQ8	1089 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	TMEM170A	Q8WVE7	144 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	NR1H4	Q96RI1	486 aa	Predicted RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	VEZT	Q9HBM0	779 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	TMEM184C	Q9NVA4	438 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	KCND2	Q9NZV8	630 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	FRMD4B	Q9Y2L6	1034 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	TTBK1	Q5TCY1	1321 aa	Predicted RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044		A0A0A0MQY5	61 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	FAM157A	C9JC47	383 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TNFSF14	O43557	240 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	CEP104	O60308	925 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	PPFIA2	O75334	1257 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	BAIAP3	O94812	1187 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TMCC1	O94876	653 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	CBX6	O95503	412 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	CAPN3	P20807	821 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	EPHA8	P29322	1005 aa	Predicted RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	CLCNKB	P51801	687 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	UFM1	P61960	85 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	EFNB1	P98172	346 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	SRSF4	Q08170	494 aa	Known RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TDG	Q13569	410 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	SMTNL2	Q2TAL5	461 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	SYTL3	Q4VX76	610 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	HYI	Q5T013	277 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	ASPHD1	Q5U4P2	390 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	MORN5	Q5VZ52	161 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	FAM180B	Q6P0A1	224 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	R3HCC1L	Q7Z5L2	792 aa	Known RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TBC1D1	Q86TI0	1168 aa	Predicted RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	CCDC25	Q86WR0	208 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TMC8	Q8IU68	726 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	SLC25A41	Q8N5S1	370 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	PLD5	Q8N7P1	536 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	C11orf65	Q8NCR3	313 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	OR4N2	Q8NGD1	307 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TDRD7	Q8NHU6	1098 aa	Known RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	ADAMTS15	Q8TE58	950 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	DDB2	Q92466	427 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZFYVE19	Q96K21	471 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TTYH1	Q9H313	450 aa	Predicted RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	PNRC2	Q9NPJ4	139 aa	Known RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	THSD1	Q9NS62	852 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	SMC4	Q9NTJ3	1288 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	OLA1	Q9NTK5	396 aa	Known RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	IRAK4	Q9NWZ3	460 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TAS2R10	Q9NYW0	307 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	IL1RAPL1	Q9NZN1	696 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	MPP6	Q9NZW5	540 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TBC1D14	Q9P2M4	693 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	SARDH	Q9UL12	918 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	BTBD3	Q9Y2F9	522 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	SLC4A4	Q9Y6R1	1079 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZNF804B	A4D1E1	1349 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	TDRD9	Q8NDG6	1382 aa	Known RBP	4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZMYM2	Q9UBW7	1377 aa		4.1	□□□□□ -1.75
PTCD3-209	ENST00000472044		A0A1W2PPH5	198 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	ARHGAP10	A1A4S6	786 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	C17orf102	A2RUQ5	167 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	PABPN1L	A6NDY0	278 aa	Known RBP	4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	KCNU1	A8MYU2	1149 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZNF814	B7Z6K7	855 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	TAF4	O00268	1085 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	ATG13	O75143	517 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	TOP3B	O95985	862 aa	Known RBP	4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	IL1A	P01583	271 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	UBL4A	P11441	157 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	UNG	P13051	313 aa	Predicted RBP	4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	PSMA4	P25789	261 aa	Known RBP	4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	YWHAQ	P27348	245 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	MAN1A1	P33908	653 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	CENPA	P49450	140 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	ARSF	P54793	590 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	EIF5	P55010	431 aa	Known RBP	4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	CYP4A11	Q02928	519 aa		4.09	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZNF667	Q5HYK9	610 aa		4.09	□□□□□ -1.75

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