RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 SYNCQ9H7C4 482 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZMAT4Q9H898 229 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 PCDH12Q9NPG4 1184 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 LUC7LQ9NQ29 371 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ENTPD7Q9NQZ7 604 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TMLHEQ9NVH6 421 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ADAM22Q9P0K1 906 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TRIM10Q9UDY6 481 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CNOT8Q9UFF9 292 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 MSRAQ9UJ68 235 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ZFP69BQ9UJL9 534 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 NOCTQ9UK39 431 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TSPAN16Q9UKR8 245 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 KIAA1257Q9ULG3 409 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CNTN6Q9UQ52 1028 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 ATP8A1Q9Y2Q0 1164 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 REXO2Q9Y3B8 237 aaKnown RBP4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CEP83Q9Y592 693 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CDY1Q9Y6F8 540 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 CENPFP49454 3210 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TANC1Q9C0D5 1861 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 HTTP42858 3142 aa4.28□□□□□ -1.72
TMEM39A-204ENST00000468545 TTC3P53804 2025 aa4.28□□□□□ -1.73
TMEM39A-204ENST00000468545 ATP8B3O60423 1300 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 TDRD15B5MCY1 1934 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 RALGAPA2Q2PPJ7 1873 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 UBA6A0AVT1 1052 aaPredicted RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 MACROD2A1Z1Q3 448 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 SH3D21A4FU49 640 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 LINC01553A4QN01 128 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 TULP2O00295 520 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 O00370 1275 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ADAM12O43184 909 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 CCP110O43303 1012 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ULK1O75385 1050 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 SOAT2O75908 522 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 BEST1O76090 585 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 FBXO21O94952 628 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 OAZ2O95190 189 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 MOCS3O95396 460 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 MPIG6BO95866 241 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 CYP1A1P04798 512 aaPredicted RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 URODP06132 367 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 FAM200BP0CF97 657 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 UNGP13051 313 aaPredicted RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 TNNT1P13805 278 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 CYP2F1P24903 491 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 CD40P25942 277 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 KLRC2P26717 231 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ELF1P32519 619 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 PPM1AP35813 382 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 SSR1P43307 286 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 GLUD2P49448 558 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 GPR15P49685 360 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 AFF3P51826 1226 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 VAV2P52735 878 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 SLC8A3P57103 927 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 GPC5P78333 572 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 SMAD3P84022 425 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ADCY1Q08828 1119 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 KIF5AQ12840 1032 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 GPM6BQ13491 265 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 LRRC32Q14392 662 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 STAT4Q14765 748 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 RTP5Q14D33 572 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 STILQ15468 1287 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 SMAD2Q15796 467 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 MGAT5BQ3V5L5 792 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ARHGAP29Q52LW3 1261 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 DNTTIP2Q5QJE6 756 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 C10orf76Q5T2E6 689 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 PLPP4Q5VZY2 271 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ARHGAP17Q68EM7 881 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 PMF1Q6P1K2 205 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 LCLAT1Q6UWP7 414 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 TRIM72Q6ZMU5 477 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 C4orf50Q6ZRC1 276 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 PAQR9Q6ZVX9 377 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 LIMS2Q7Z4I7 341 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 RBM23Q86U06 439 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 TTC30AQ86WT1 665 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 CILP2Q8IUL8 1156 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 REXO1L1PQ8IX06 675 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 MCOLN2Q8IZK6 566 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 FUKQ8N0W3 1084 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 CCAR2Q8N163 923 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ANKRD52Q8NB46 1076 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ATAD1Q8NBU5 361 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 STKLD1Q8NE28 680 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ATL2Q8NHH9 583 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 MYCBPAPQ8TBZ2 947 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 KIAA1524Q8TCG1 905 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 SPPL3Q8TCT6 385 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 POF1BQ8WVV4 589 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ARNTL2Q8WYA1 636 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 CTNNBL1Q8WYA6 563 aaPredicted RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 NDRG1Q92597 394 aaKnown RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 ZNF653Q96CK0 615 aa4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 FOXRED1Q96CU9 486 aaPredicted RBP4.27□□□□□ -1.73
TMEM39A-204ENST00000468545 C18orf8Q96DM3 657 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms