RNA–Protein interactions for RNA: ENST00000467272.6

UBR4-211, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-211ENST00000467272 SRSF1Q07955 248 aaKnown RBP eCLIP12.48□□□□□ -0.41
UBR4-211ENST00000467272 CLN3Q13286 438 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 PDCLQ13371 301 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 ACCSLQ4AC99 568 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 GUSBP11Q6P575 273 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 ERN2Q76MJ5 926 aaKnown RBP12.48□□□□□ -0.41
UBR4-211ENST00000467272 FMR1NBQ8N0W7 255 aaPredicted RBP12.48□□□□□ -0.41
UBR4-211ENST00000467272 EXD3Q8N9H8 876 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 CHST14Q8NCH0 376 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 MAPK15Q8TD08 544 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 ZNF606Q8WXB4 792 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 NT5C3BQ969T7 300 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 CEP63Q96MT8 703 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 RPRD1AQ96P16 312 aaPredicted RBP12.48□□□□□ -0.41
UBR4-211ENST00000467272 LENG8Q96PV6 779 aaPredicted RBP12.48□□□□□ -0.41
UBR4-211ENST00000467272 PPP1R9BQ96SB3 815 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 MYOCQ99972 504 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 BOCQ9BWV1 1114 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 C1QTNF2Q9BXJ5 285 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 CALN1Q9BXU9 219 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 ACP6Q9NPH0 428 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 ST7Q9NRC1 585 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 VPS51Q9UID3 782 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 SALL4Q9UJQ4 1053 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 SLC25A13Q9UJS0 675 aa12.48□□□□□ -0.41
UBR4-211ENST00000467272 PNMA8BQ9ULN7 279 aaPredicted RBP12.48□□□□□ -0.41
UBR4-211ENST00000467272 USP9YO00507 2555 aaPredicted RBP12.47□□□□□ -0.41
UBR4-211ENST00000467272 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.47□□□□□ -0.41
UBR4-211ENST00000467272 A6NNZ2 444 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 PYCARD-AS1I3L0S3 204 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 ARHGAP6O43182 974 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 AP1G1O43747 822 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 NOBOXO60393 691 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 SNAP91O60641 907 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 ZMPSTE24O75844 475 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 CNTN5O94779 1100 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 CLCN6P51797 869 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 CDH4P55283 916 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 KRT85P78386 507 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 NUCB2P80303 420 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 MTA1Q13330 715 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 ZNF177Q13360 481 aaPredicted RBP12.47□□□□□ -0.41
UBR4-211ENST00000467272 LINC00303Q3SY05 128 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 ALFQ53S48 1182 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 ZNF542PQ5EBM4 170 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 KIAA1614Q5VZ46 1190 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 PARGQ86W56 976 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 DEFB106AQ8N104 65 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 TPCN2Q8NHX9 752 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 ASB12Q8WXK4 309 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 TSG101Q99816 390 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 SLC17A9Q9BYT1 436 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 OSBPL2Q9H1P3 480 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 RMND1Q9NWS8 449 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 DDIT4Q9NX09 232 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 ARHGEF38Q9NXL2 777 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 NCKIPSDQ9NZQ3 722 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 SLC12A6Q9UHW9 1150 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 VPS28Q9UK41 221 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 ACSL6Q9UKU0 697 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 VANGL2Q9ULK5 521 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 FADS3Q9Y5Q0 445 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 NBPF19A0A087WUL8 3843 aa12.47□□□□□ -0.41
UBR4-211ENST00000467272 SPENQ96T58 3664 aaKnown RBP12.47□□□□□ -0.41
UBR4-211ENST00000467272 IGLV3-10A0A075B6K4 115 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 A0A0D9SEW6 157 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 BECN2A8MW95 431 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 KPNA3O00505 521 aaPredicted RBP12.46□□□□□ -0.41
UBR4-211ENST00000467272 NTN3O00634 580 aaPredicted RBP12.46□□□□□ -0.41
UBR4-211ENST00000467272 TERTO14746 1132 aaKnown RBP12.46□□□□□ -0.41
UBR4-211ENST00000467272 PAGE1O75459 146 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 CD160O95971 181 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 PRNPP04156 253 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 CD44P16070 742 aaKnown RBP12.46□□□□□ -0.41
UBR4-211ENST00000467272 ITGB6P18564 788 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 RRM1P23921 792 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 CSRP3P50461 194 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 MARSP56192 900 aaKnown RBP12.46□□□□□ -0.41
UBR4-211ENST00000467272 PFN3P60673 137 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 CDK17Q00537 523 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 CCDC15Q0P6D6 951 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 EIF2B5Q13144 721 aaKnown RBP12.46□□□□□ -0.41
UBR4-211ENST00000467272 CDKN3Q16667 212 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 HS1BP3Q53T59 392 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 C3orf38Q5JPI3 329 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 PERM1Q5SV97 790 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 OR6B2Q6IFH4 312 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 KIAA1161Q6NSJ0 714 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 TTI2Q6NXR4 508 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 OLFML1Q6UWY5 402 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 DPY19L3Q6ZPD9 716 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 SETD3Q86TU7 594 aaPredicted RBP12.46□□□□□ -0.41
UBR4-211ENST00000467272 TRIM59Q8IWR1 403 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 DCAF4L2Q8NA75 395 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 TBATAQ96M53 351 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 CPXM1Q96SM3 734 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.46□□□□□ -0.41
UBR4-211ENST00000467272 SCAND2PQ9GZW5 306 aaPredicted RBP12.46□□□□□ -0.41
UBR4-211ENST00000467272 ABCG4Q9H172 646 aa12.46□□□□□ -0.41
UBR4-211ENST00000467272 FAM204AQ9H8W3 233 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms