RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 USP33Q8TEY7 942 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 ATXN2LQ8WWM7 1075 aaKnown RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 EME1Q96AY2 570 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 SUSD3Q96L08 255 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 PRPF18Q99633 342 aaKnown RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 CORO1BQ9BR76 489 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 TMEM121Q9BTD3 319 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 TLR9Q9NR96 1032 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 RAD18Q9NS91 495 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 L3MBTL1Q9Y468 752 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 HEY1Q9Y5J3 304 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 FGF10O15520 208 aaPredicted RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 FGFR1P11362 822 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 TAC1P20366 129 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 IVDP26440 423 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 SULT2A1Q06520 285 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 SOX4Q06945 474 aaPredicted RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 RIPK1Q13546 671 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 DSC3Q14574 896 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 EFTUD2Q15029 972 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP54-210ENST00000466048 C15orf59Q2T9L4 293 aaPredicted RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 BRMS1LQ5PSV4 323 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 RNASEH2BQ5TBB1 312 aaKnown RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 SLC9A4Q6AI14 798 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 SCARA3Q6AZY7 606 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 RAPH1Q70E73 1250 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 LINC00523Q86TU6 105 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 LRRC34Q8IZ02 419 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 DEFB106AQ8N104 65 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 HJURPQ8NCD3 748 aaPredicted RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 KREMEN2Q8NCW0 462 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 LRRC39Q96DD0 335 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 MAGEB18Q96M61 343 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 CINPQ9BW66 212 aaPredicted RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 KLHL25Q9H0H3 589 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 MMADHCQ9H3L0 296 aaPredicted RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 RAD21L1Q9H4I0 556 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 STN1Q9H668 368 aaKnown RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 TBC1D13Q9NVG8 400 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 UBAP1Q9NZ09 502 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 FAM8A1Q9UBU6 413 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 ZNF212Q9UDV6 495 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 B2RBV5 119 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 ENPP3O14638 875 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 SPTLC1O15269 473 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 HNRNPA1P09651 372 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP54-210ENST00000466048 CDH2P19022 906 aaPredicted RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 SP100P23497 879 aaPredicted RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 PPIDQ08752 370 aaKnown RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 RASA2Q15283 850 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 BEND5Q7L4P6 421 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 KIF2BQ8N4N8 673 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 CALML6Q8TD86 181 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 C17orf50Q8WW18 174 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 INPP5DQ92835 1189 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 BADQ92934 168 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 MYLPFQ96A32 169 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 NTAN1Q96AB6 310 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 DCUN1D1Q96GG9 259 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 ABHD8Q96I13 439 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 LGALS13Q9UHV8 139 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 XPO7Q9UIA9 1087 aaKnown RBP7.79□□□□□ -1.16
USP54-210ENST00000466048 SCN10AQ9Y5Y9 1956 aa7.79□□□□□ -1.16
USP54-210ENST00000466048 DFFAO00273 331 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 INPPL1O15357 1258 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 KCNN4O15554 427 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 RASSF9O75901 435 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 LMO2P25791 158 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 RAB14P61106 215 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 PFKPQ01813 784 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 SLC34A1Q06495 639 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TRAF7Q6Q0C0 670 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 NANOGNBQ7Z5D8 188 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 ANKS1BQ7Z6G8 1248 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 OSTM1Q86WC4 334 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TDRPQ86YL5 185 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 FAM71DQ8N9W8 422 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 PPP1R16AQ96I34 528 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 C2orf49Q9BVC5 232 aaPredicted RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 EPS8L2Q9H6S3 715 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 RABGEF1Q9UJ41 708 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 PDCD11Q14690 1871 aaKnown RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 SAC3D1A6NKF1 404 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 NT5C1B-RDH14C9J2C7 533 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TCF4P15884 667 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 HOXB8P17481 243 aaPredicted RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 GEMP55040 296 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TUBA4AP68366 448 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 CDK16Q00536 496 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 PEX6Q13608 980 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TSTA3Q13630 321 aaPredicted RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 UPP1Q16831 310 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TTC39BQ5VTQ0 682 aaPredicted RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 PID1Q7Z2X4 250 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 PRUNE1Q86TP1 453 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 CCNJLQ8IV13 435 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 ZBED8Q8IZ13 594 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 DEPDC1BQ8WUY9 529 aa7.78□□□□□ -1.16
USP54-210ENST00000466048 TFB1MQ8WVM0 346 aaKnown RBP7.78□□□□□ -1.16
USP54-210ENST00000466048 PRCCQ92733 491 aaPredicted RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms