RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 SEL1L3Q68CR1 1132 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 KDM7AQ6ZMT4 941 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 GCNT7Q6ZNI0 430 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 ABI3BPQ7Z7G0 1075 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 SLC22A18ASQ8N1D0 253 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 SLC39A7Q92504 469 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 C1orf74Q96LT6 269 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 CALN1Q9BXU9 219 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 TNKS2Q9H2K2 1166 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 DYRK4Q9NR20 520 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 TMPRSS4Q9NRS4 437 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 DNAJC12Q9UKB3 198 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 ZNF462Q96JM2 2506 aa23.13■■□□□ 1.29
USP4-208ENST00000464168 SHROOM3Q8TF72 1996 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 IGLV3-10A0A075B6K4 115 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 TK2O00142 265 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 ATXN7O15265 892 aaPredicted RBP23.12■■□□□ 1.29
USP4-208ENST00000464168 ZNF821O75541 412 aaPredicted RBP23.12■■□□□ 1.29
USP4-208ENST00000464168 PCDH8O95206 1070 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 F9P00740 461 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 CKMT1AP12532 417 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 ACTN2P35609 894 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 SULT1E1P49888 294 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 TBC1D25Q3MII6 688 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 TMEM259Q4ZIN3 620 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 HS1BP3Q53T59 392 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 C22orf39Q6P5X5 142 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 DPY19L3Q6ZPD9 716 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 TMC6Q7Z403 805 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 TFAP2DQ7Z6R9 452 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 ERICH1Q86X53 443 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 GRIN3AQ8TCU5 1115 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 FCRL3Q96P31 734 aaPredicted RBP23.12■■□□□ 1.29
USP4-208ENST00000464168 KIAA1468Q9P260 1216 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 IL36AQ9UHA7 158 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 PCDHB1Q9Y5F3 818 aa23.12■■□□□ 1.29
USP4-208ENST00000464168 OPA1O60313 960 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 LEFTY1O75610 366 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 C1QL1O75973 258 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 ENDOD1O94919 500 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 DEUP1Q05D60 604 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 CDCP2Q5VXM1 449 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 LRRC31Q6UY01 552 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 FAM71AQ8IYT1 594 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 OR7D4Q8NG98 312 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 IFT43Q96FT9 208 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 BMFQ96LC9 184 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 TBCBQ99426 244 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 STAP1Q9ULZ2 295 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 WASF2Q9Y6W5 498 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 ATMQ13315 3056 aa23.11■■□□□ 1.29
USP4-208ENST00000464168 MYF5P13349 255 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 OR1E1P30953 314 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 GABRB2P47870 512 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 TLE3Q04726 772 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 C19orf57Q0VDD7 668 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 CCDC173Q0VFZ6 552 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 FGL2Q14314 439 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 SLC25A52Q3SY17 297 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 DPY19L2P1Q6NXN4 242 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 Q6ZSR6 202 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 NLGN3Q9NZ94 848 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 ZNF212Q9UDV6 495 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 PAXBP1Q9Y5B6 917 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 HS3ST3A1Q9Y663 406 aa23.1■■□□□ 1.29
USP4-208ENST00000464168 LY6G6EA0A0G2JKS1 128 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 ILVBLA1L0T0 632 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 SCAMP1O15126 338 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 ZMPSTE24O75844 475 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 CDH5P33151 784 aaPredicted RBP23.09■■□□□ 1.29
USP4-208ENST00000464168 SCNN1AP37088 669 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 RECQLP46063 649 aaPredicted RBP23.09■■□□□ 1.29
USP4-208ENST00000464168 MTIF2P46199 727 aaKnown RBP23.09■■□□□ 1.29
USP4-208ENST00000464168 ZNF542PQ5EBM4 170 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 ACBD5Q5T8D3 534 aaPredicted RBP23.09■■□□□ 1.29
USP4-208ENST00000464168 SPACA3Q8IXA5 215 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 TMEM35BQ8NCS4 154 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 C18orf8Q96DM3 657 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 APOLD1Q96LR9 279 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 SPON2Q9BUD6 331 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 SLC17A9Q9BYT1 436 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 GPR27Q9NS67 375 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 U3KQA8 63 aa23.09■■□□□ 1.29
USP4-208ENST00000464168 TDRD6O60522 2096 aaKnown RBP23.09■■□□□ 1.29
USP4-208ENST00000464168 ASH1LQ9NR48 2969 aaKnown RBP23.08■■□□□ 1.29
USP4-208ENST00000464168 POM121BA6NF01 834 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 SRGAP2O75044 1071 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 ALPPL2P10696 532 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 NEK3P51956 506 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 BPIFB4P59827 614 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 ZNF783Q6ZMS7 281 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 GPR155Q7Z3F1 870 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 XYLT1Q86Y38 959 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 DCP2Q8IU60 420 aaKnown RBP23.08■■□□□ 1.29
USP4-208ENST00000464168 FAM181AQ8N9Y4 354 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 LSM14AQ8ND56 463 aaKnown RBP23.08■■□□□ 1.29
USP4-208ENST00000464168 FAM174AQ8TBP5 190 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 PPP1R16AQ96I34 528 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 TMEM51Q9NW97 253 aa23.08■■□□□ 1.29
USP4-208ENST00000464168 DNAJC28Q9NX36 388 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms