RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 DPP10Q8N608 796 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 LSM14AQ8ND56 463 aaKnown RBP4.3□□□□□ -1.72
USP40-209ENST00000452724 SETD9Q8NE22 299 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 ZNF548Q8NEK5 533 aaPredicted RBP4.3□□□□□ -1.72
USP40-209ENST00000452724 CMASQ8NFW8 434 aaPredicted RBP4.3□□□□□ -1.72
USP40-209ENST00000452724 HDAC7Q8WUI4 952 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 MARK4Q96L34 752 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 TBATAQ96M53 351 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 CD180Q99467 661 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 PNRC2Q9NPJ4 139 aaKnown RBP4.3□□□□□ -1.72
USP40-209ENST00000452724 RNF146Q9NTX7 359 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 C9orf78Q9NZ63 289 aaPredicted RBP4.3□□□□□ -1.72
USP40-209ENST00000452724 PDP2Q9P2J9 529 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 HSF4Q9ULV5 492 aa4.3□□□□□ -1.72
USP40-209ENST00000452724 CNTNAP2Q9UHC6 1331 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 A0A0A0MQY5 61 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 TMEM272A0A1B0GTI8 110 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 FAM90A8PA6NJQ4 464 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 ZC3H11AO75152 810 aaKnown RBP eCLIP4.29□□□□□ -1.72
USP40-209ENST00000452724 TMCC1O94876 653 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 EPN2O95208 641 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 FAM90A13PP0C7W8 464 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 FAM90A24PP0C7X0 464 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 CD72P21854 359 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 PSMC2P35998 433 aaKnown RBP4.29□□□□□ -1.72
USP40-209ENST00000452724 PGM1P36871 562 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 PTPN9P43378 593 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 NAA25Q14CX7 972 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 ALFQ53S48 1182 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 MANEAQ5SRI9 462 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 DAB2IPQ5VWQ8 1189 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 NAPEPLDQ6IQ20 393 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 RETSATQ6NUM9 610 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 WDR5BQ86VZ2 330 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 GHDCQ8N2G8 530 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 ESX1Q8N693 406 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 LRRC57Q8N9N7 239 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 TMEM174Q8WUU8 243 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 LYZL4Q96KX0 146 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 CLSTN3Q9BQT9 956 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 PHF7Q9BWX1 381 aaPredicted RBP4.29□□□□□ -1.72
USP40-209ENST00000452724 CHMP4AQ9BY43 222 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 TASP1Q9H6P5 420 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 FZD3Q9NPG1 666 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 ALKBH4Q9NXW9 302 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 GRHL1Q9NZI5 618 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 FBXO40Q9UH90 709 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 ANAPC4Q9UJX5 808 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 CRYL1Q9Y2S2 319 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 MST1RQ04912 1400 aa4.29□□□□□ -1.72
USP40-209ENST00000452724 IGLV5-39A0A0G2JS06 123 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 TARSL2A2RTX5 802 aaKnown RBP4.28□□□□□ -1.72
USP40-209ENST00000452724 B4DGG1 531 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 MDM4O15151 490 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 CHRM4P08173 479 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 HNRNPA1P09651 372 aaKnown RBP eCLIP4.28□□□□□ -1.72
USP40-209ENST00000452724 IFIT1P09914 478 aaKnown RBP4.28□□□□□ -1.72
USP40-209ENST00000452724 UNGP13051 313 aaPredicted RBP4.28□□□□□ -1.72
USP40-209ENST00000452724 XBP1P17861 261 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 CLCNKBP51801 687 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 PKP1Q13835 747 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 RPE65Q16518 533 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 SLC18A3Q16572 532 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 LEXMQ3ZCV2 418 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 SYTL3Q4VX76 610 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 TBC1D9BQ66K14 1250 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 NUGGCQ68CJ6 796 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 KIAA1161Q6NSJ0 714 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 C9orf47Q6ZRZ4 202 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 LRRC8DQ7L1W4 858 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 TRAPPC11Q7Z392 1133 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 ADGRG6Q86SQ4 1221 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 GPSM1Q86YR5 675 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 RFWD2Q8NHY2 731 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 RAB40AQ8WXH6 277 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 CNOT9Q92600 299 aaKnown RBP4.28□□□□□ -1.72
USP40-209ENST00000452724 HTRA1Q92743 480 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 NLRP4Q96MN2 994 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.28□□□□□ -1.72
USP40-209ENST00000452724 LMAN2LQ9H0V9 348 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 FAM234AQ9H0X4 552 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 CXorf56Q9H5V9 222 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 MAP6D1Q9H9H5 199 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 WASH6PQ9NQA3 447 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 ZBTB40Q9NUA8 1239 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 IFT80Q9P2H3 777 aaPredicted RBP4.28□□□□□ -1.72
USP40-209ENST00000452724 NLKQ9UBE8 527 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 PLEKHB1Q9UF11 243 aaPredicted RBP4.28□□□□□ -1.72
USP40-209ENST00000452724 PGAP2Q9UHJ9 254 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 CDH22Q9UJ99 828 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 SLC13A4Q9UKG4 626 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 RAP2CQ9Y3L5 183 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 CLDN16Q9Y5I7 305 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 SLC4A4Q9Y6R1 1079 aa4.28□□□□□ -1.72
USP40-209ENST00000452724 EYA2O00167 538 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 PER2O15055 1255 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 RNMTO43148 476 aaKnown RBP4.27□□□□□ -1.73
USP40-209ENST00000452724 GUCY1B2O75343 617 aa4.27□□□□□ -1.73
USP40-209ENST00000452724 SYF2O95926 243 aaKnown RBP4.27□□□□□ -1.73
USP40-209ENST00000452724 AGR2O95994 175 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms