RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 NRLP54845 237 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 RPS14P62263 151 aaKnown RBP16.33■□□□□ 0.2
USP39-205ENST00000442708 SLC20A2Q08357 652 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 GALNT2Q10471 571 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 CYTH1Q15438 398 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 DCAF12L1Q5VU92 463 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 KIAA1324Q6UXG2 1013 aaKnown RBP16.33■□□□□ 0.2
USP39-205ENST00000442708 RFX6Q8HWS3 928 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 SYCE1Q8N0S2 351 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 PGBD3Q8N328 593 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 CHST14Q8NCH0 376 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 OR2A12Q8NGT7 310 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 EXD1Q8NHP7 514 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 VOPP1Q96AW1 172 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 HES6Q96HZ4 224 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 RSPH9Q9H1X1 276 aaPredicted RBP16.33■□□□□ 0.2
USP39-205ENST00000442708 PRDM16Q9HAZ2 1276 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 DTLQ9NZJ0 730 aa16.33■□□□□ 0.2
USP39-205ENST00000442708 IPO11Q9UI26 975 aaKnown RBP16.33■□□□□ 0.2
USP39-205ENST00000442708 ZSCAN5CA6NGD5 496 aaPredicted RBP16.32■□□□□ 0.2
USP39-205ENST00000442708 BNIP3LO60238 219 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 CTSLP07711 333 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 PYGMP11217 842 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 SERPINB6P35237 376 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 DYNLT1P63172 113 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 TFDP3Q5H9I0 405 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 KAZNQ674X7 775 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 DPY19L3Q6ZPD9 716 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 FAM160A2Q8N612 972 aaPredicted RBP16.32■□□□□ 0.2
USP39-205ENST00000442708 PHOX2BQ99453 314 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 TM6SF2Q9BZW4 377 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 CEP44Q9C0F1 390 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 LHX3Q9UBR4 397 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 UBA2Q9UBT2 640 aaPredicted RBP16.32■□□□□ 0.2
USP39-205ENST00000442708 SARDHQ9UL12 918 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.32■□□□□ 0.2
USP39-205ENST00000442708 PCDHGA2Q9Y5H1 932 aa16.32■□□□□ 0.2
USP39-205ENST00000442708 USP27XA6NNY8 438 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 APOL1O14791 398 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 P2RY2P41231 377 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 RWDD2BP57060 319 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 GEMIN4P57678 1058 aaKnown RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 IL10RBQ08334 325 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 ZNF211Q13398 564 aaPredicted RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 ELAVL3Q14576 367 aaKnown RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 MAP7D1Q3KQU3 841 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 INO80DQ53TQ3 878 aaPredicted RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 ODF2Q5BJF6 829 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 ATXN7L2Q5T6C5 722 aaPredicted RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 MEI1Q5TIA1 1274 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 ZNF776Q68DI1 518 aaPredicted RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 MMAAQ8IVH4 418 aaKnown RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 CCDC50Q8IVM0 306 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 PCDH20Q8N6Y1 951 aaKnown RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 OR6K2Q8NGY2 324 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 ATOH1Q92858 354 aaPredicted RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 ISG20Q96AZ6 181 aaKnown RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 SIPA1Q96FS4 1042 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 ZNF419Q96HQ0 510 aaPredicted RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 RBM41Q96IZ5 413 aaKnown RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 HEMGNQ9BXL5 484 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 TRMT1Q9NXH9 659 aaKnown RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 USP36Q9P275 1121 aaKnown RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 SAE1Q9UBE0 346 aaPredicted RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 MBD1Q9UIS9 605 aaPredicted RBP16.31■□□□□ 0.2
USP39-205ENST00000442708 HEY1Q9Y5J3 304 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 WDR87Q6ZQQ6 2873 aa16.31■□□□□ 0.2
USP39-205ENST00000442708 PIEZO1Q92508 2521 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 NUMA1Q14980 2115 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 ABCA7Q8IZY2 2146 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 CEP192Q8TEP8 1941 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 MIF4GDA9UHW6 222 aaKnown RBP16.3■□□□□ 0.2
USP39-205ENST00000442708 MCF2LO15068 1137 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 MUSKO15146 869 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 MID1O15344 667 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 CST8O60676 142 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 PECAM1P16284 738 aaPredicted RBP16.3■□□□□ 0.2
USP39-205ENST00000442708 BCKDHBP21953 392 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 GKP32189 559 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 GARSP41250 739 aaKnown RBP16.3■□□□□ 0.2
USP39-205ENST00000442708 RGRP47804 291 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 PSMD8P48556 350 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 DNA2P51530 1060 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 SLC10A7Q0GE19 358 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 CST6Q15828 149 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 PPP2R5EQ16537 467 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 CARD16Q5EG05 197 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 FAM182AQ5T1J6 154 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 B4GALNT4Q76KP1 1039 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 ATPAF2Q8N5M1 289 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.3■□□□□ 0.2
USP39-205ENST00000442708 GAB3Q8WWW8 586 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 PRCCQ92733 491 aaPredicted RBP16.3■□□□□ 0.2
USP39-205ENST00000442708 MAK16Q9BXY0 300 aaKnown RBP16.3■□□□□ 0.2
USP39-205ENST00000442708 FBRSQ9HAH7 460 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 SP110Q9HB58 689 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 ITM2CQ9NQX7 267 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 SERGEFQ9UGK8 458 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 PPM1HQ9ULR3 514 aa16.3■□□□□ 0.2
USP39-205ENST00000442708 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.3■□□□□ 0.22e-8■■■□□ 16.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms